miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 5' -58.3 NC_004065.1 + 872 0.67 0.886161
Target:  5'- gCCG-GGCGAgGGCGCCccgcCGGCauGCUa -3'
miRNA:   3'- -GGCuCCGCUaCCGCGGaa--GCUG--CGAc -5'
15894 5' -58.3 NC_004065.1 + 4407 0.66 0.892597
Target:  5'- uUCGGaGCGGUGGCcacggcggGCCU--GACGCUGa -3'
miRNA:   3'- -GGCUcCGCUACCG--------CGGAagCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 24096 0.7 0.722178
Target:  5'- gCCGAGGaCGuccAUGGCGCCgacgUCGGC-CUc -3'
miRNA:   3'- -GGCUCC-GC---UACCGCGGa---AGCUGcGAc -5'
15894 5' -58.3 NC_004065.1 + 24852 0.69 0.758249
Target:  5'- cCCGAuguuggcGGCGAcGGCgGCC-UCGACGgUGg -3'
miRNA:   3'- -GGCU-------CCGCUaCCG-CGGaAGCUGCgAC- -5'
15894 5' -58.3 NC_004065.1 + 27270 0.66 0.898827
Target:  5'- aCGAGGaCGAagagaccggcGGCGCCgccgaCGACGCg- -3'
miRNA:   3'- gGCUCC-GCUa---------CCGCGGaa---GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 27832 0.69 0.785851
Target:  5'- cCCGGGGUGGUGGCugGCCguggUGcCGCg- -3'
miRNA:   3'- -GGCUCCGCUACCG--CGGaa--GCuGCGac -5'
15894 5' -58.3 NC_004065.1 + 28399 0.66 0.892597
Target:  5'- aCCGGGGUGuuccacggGGCGCagcuccugguCUUCGACGaCUc -3'
miRNA:   3'- -GGCUCCGCua------CCGCG----------GAAGCUGC-GAc -5'
15894 5' -58.3 NC_004065.1 + 28840 0.7 0.740838
Target:  5'- cCCGAGcCGGgacGCGCCgcuuggugUCGGCGCUGc -3'
miRNA:   3'- -GGCUCcGCUac-CGCGGa-------AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 28993 0.69 0.785851
Target:  5'- uCCGGcGGCGGUggcgaGGCGCCgcgCGcACGCg- -3'
miRNA:   3'- -GGCU-CCGCUA-----CCGCGGaa-GC-UGCGac -5'
15894 5' -58.3 NC_004065.1 + 35120 0.66 0.921637
Target:  5'- aUCGAGaCGgcGGCGCCguggucUCGAUGCc- -3'
miRNA:   3'- -GGCUCcGCuaCCGCGGa-----AGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 35386 0.71 0.693685
Target:  5'- gCCGAGGCG-UGGacCGUCaUCGGCGCc- -3'
miRNA:   3'- -GGCUCCGCuACC--GCGGaAGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 36292 1.1 0.002706
Target:  5'- gCCGAGGCGAUGGCGCCUUCGACGCUGa -3'
miRNA:   3'- -GGCUCCGCUACCGCGGAAGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 42057 0.67 0.872684
Target:  5'- ---cGGCGugcUGGCGCUggUGugGCUGa -3'
miRNA:   3'- ggcuCCGCu--ACCGCGGaaGCugCGAC- -5'
15894 5' -58.3 NC_004065.1 + 45977 0.71 0.655078
Target:  5'- gCCGuguguaacGGCGAccugGGCGCCguggCGGCGUUGa -3'
miRNA:   3'- -GGCu-------CCGCUa---CCGCGGaa--GCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 48106 0.66 0.921637
Target:  5'- gCGGcGGCGGUGGCGg---CGGCGgUGg -3'
miRNA:   3'- gGCU-CCGCUACCGCggaaGCUGCgAC- -5'
15894 5' -58.3 NC_004065.1 + 48467 0.68 0.827752
Target:  5'- -gGAGGUGAcGGUGCCguagUCGcCGCg- -3'
miRNA:   3'- ggCUCCGCUaCCGCGGa---AGCuGCGac -5'
15894 5' -58.3 NC_004065.1 + 50431 0.69 0.784978
Target:  5'- cUCGAGGCGcggucgcacacgcGUGGCGCCccUUCaGCGCc- -3'
miRNA:   3'- -GGCUCCGC-------------UACCGCGG--AAGcUGCGac -5'
15894 5' -58.3 NC_004065.1 + 52470 0.7 0.71274
Target:  5'- aCCGuccuccuuuuGGCGGUGGgGUgUUgGGCGCUGu -3'
miRNA:   3'- -GGCu---------CCGCUACCgCGgAAgCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 55431 0.74 0.483898
Target:  5'- uCCGGGGCGcgGGUcuUCgagUCGGCGCUGg -3'
miRNA:   3'- -GGCUCCGCuaCCGc-GGa--AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 57464 0.67 0.865652
Target:  5'- gUCGuGGCGAUGGCGCgg-CGGUGgUGg -3'
miRNA:   3'- -GGCuCCGCUACCGCGgaaGCUGCgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.