miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15894 5' -58.3 NC_004065.1 + 60149 0.69 0.77352
Target:  5'- uUGGGGaacgGAUcGGCGCCcgccaugcacaggUCGACGCUGg -3'
miRNA:   3'- gGCUCCg---CUA-CCGCGGa------------AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 200797 0.71 0.664773
Target:  5'- gCG-GGCGAcGGCGUC-UCGGCGCg- -3'
miRNA:   3'- gGCuCCGCUaCCGCGGaAGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 154149 0.71 0.684084
Target:  5'- cCCG-GGCGGUGGCGgCggcggcggCGGCgGCUGu -3'
miRNA:   3'- -GGCuCCGCUACCGCgGaa------GCUG-CGAC- -5'
15894 5' -58.3 NC_004065.1 + 24096 0.7 0.722178
Target:  5'- gCCGAGGaCGuccAUGGCGCCgacgUCGGC-CUc -3'
miRNA:   3'- -GGCUCC-GC---UACCGCGGa---AGCUGcGAc -5'
15894 5' -58.3 NC_004065.1 + 143125 0.7 0.731547
Target:  5'- gCCGAgGGCGAgaccGGCGCCg-CGAC-CUGc -3'
miRNA:   3'- -GGCU-CCGCUa---CCGCGGaaGCUGcGAC- -5'
15894 5' -58.3 NC_004065.1 + 68381 0.69 0.750044
Target:  5'- aCCGAGGCGAagauCGCCgcguUCGugGCg- -3'
miRNA:   3'- -GGCUCCGCUacc-GCGGa---AGCugCGac -5'
15894 5' -58.3 NC_004065.1 + 126228 0.69 0.750044
Target:  5'- aCGAGGCG--GGCGUCUUC-ACGCc- -3'
miRNA:   3'- gGCUCCGCuaCCGCGGAAGcUGCGac -5'
15894 5' -58.3 NC_004065.1 + 24852 0.69 0.758249
Target:  5'- cCCGAuguuggcGGCGAcGGCgGCC-UCGACGgUGg -3'
miRNA:   3'- -GGCU-------CCGCUaCCG-CGGaAGCUGCgAC- -5'
15894 5' -58.3 NC_004065.1 + 68657 0.69 0.759156
Target:  5'- gCCGAGGCGuacGCGCagUCGGCGUa- -3'
miRNA:   3'- -GGCUCCGCuacCGCGgaAGCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 71982 0.71 0.664773
Target:  5'- cCCgGAGGCGAcgcaugcccUGGaggugaGCCUgcuggacuucUCGACGCUGa -3'
miRNA:   3'- -GG-CUCCGCU---------ACCg-----CGGA----------AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 144462 0.71 0.664773
Target:  5'- gCGaAGGCGAccaUGGCGCCgaacaCGACGUg- -3'
miRNA:   3'- gGC-UCCGCU---ACCGCGGaa---GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 45977 0.71 0.655078
Target:  5'- gCCGuguguaacGGCGAccugGGCGCCguggCGGCGUUGa -3'
miRNA:   3'- -GGCu-------CCGCUa---CCGCGGaa--GCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 55431 0.74 0.483898
Target:  5'- uCCGGGGCGcgGGUcuUCgagUCGGCGCUGg -3'
miRNA:   3'- -GGCUCCGCuaCCGc-GGa--AGCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 145455 0.74 0.492961
Target:  5'- -aGAGGCGAUGGCGUCg--GGgGCUGc -3'
miRNA:   3'- ggCUCCGCUACCGCGGaagCUgCGAC- -5'
15894 5' -58.3 NC_004065.1 + 225382 0.73 0.529945
Target:  5'- cCCGcGGCGggGGCGCU---GGCGCUGa -3'
miRNA:   3'- -GGCuCCGCuaCCGCGGaagCUGCGAC- -5'
15894 5' -58.3 NC_004065.1 + 66125 0.73 0.558335
Target:  5'- aCCGAGGCGcUGGCGCgCUgggccgcggacCGGCGCc- -3'
miRNA:   3'- -GGCUCCGCuACCGCG-GAa----------GCUGCGac -5'
15894 5' -58.3 NC_004065.1 + 67497 0.73 0.566939
Target:  5'- aCCGAGGCGAUcucGGCGCugucguuCUUCGGgGCc- -3'
miRNA:   3'- -GGCUCCGCUA---CCGCG-------GAAGCUgCGac -5'
15894 5' -58.3 NC_004065.1 + 70497 0.73 0.567897
Target:  5'- aCCGugaAGGCGAUGGCGgcgcCCUucUCGACGgaGc -3'
miRNA:   3'- -GGC---UCCGCUACCGC----GGA--AGCUGCgaC- -5'
15894 5' -58.3 NC_004065.1 + 140145 0.72 0.587138
Target:  5'- uUCGGGGCcgacGAUGGCGCCgUCGACa--- -3'
miRNA:   3'- -GGCUCCG----CUACCGCGGaAGCUGcgac -5'
15894 5' -58.3 NC_004065.1 + 161021 0.72 0.633701
Target:  5'- aCGAGGCGGcaucgacgugcaGGgGCCggUCGACGCUa -3'
miRNA:   3'- gGCUCCGCUa-----------CCgCGGa-AGCUGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.