miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15895 3' -54.8 NC_004065.1 + 107749 0.66 0.9793
Target:  5'- cGGCCggCGGAUgCCCcaggucggUGUCGGcGCGGGa -3'
miRNA:   3'- -UCGGaaGCUUA-GGG--------ACAGCCcUGUCU- -5'
15895 3' -54.8 NC_004065.1 + 208861 0.66 0.974568
Target:  5'- gAGCCguugCGGAUCCUcGcCGGGGCu-- -3'
miRNA:   3'- -UCGGaa--GCUUAGGGaCaGCCCUGucu -5'
15895 3' -54.8 NC_004065.1 + 31385 0.66 0.974568
Target:  5'- cGGCCggCGGAUCCUcucgGcCGGGACc-- -3'
miRNA:   3'- -UCGGaaGCUUAGGGa---CaGCCCUGucu -5'
15895 3' -54.8 NC_004065.1 + 186521 0.66 0.971652
Target:  5'- uGGCCgcCGAGUCCCUGcaguccuUCGGuAgGGAa -3'
miRNA:   3'- -UCGGaaGCUUAGGGAC-------AGCCcUgUCU- -5'
15895 3' -54.8 NC_004065.1 + 74820 0.66 0.966061
Target:  5'- gAGCgUggaGAcgCCCggGUCGGGACcGAg -3'
miRNA:   3'- -UCGgAag-CUuaGGGa-CAGCCCUGuCU- -5'
15895 3' -54.8 NC_004065.1 + 65608 0.66 0.966061
Target:  5'- uGCCUguacaacUGGAUCCCgGUaCGGcGGCGGAa -3'
miRNA:   3'- uCGGAa------GCUUAGGGaCA-GCC-CUGUCU- -5'
15895 3' -54.8 NC_004065.1 + 139834 0.67 0.962826
Target:  5'- cGGCCUg-GAGUCCCgGgaggCGGGcgacgGCGGAg -3'
miRNA:   3'- -UCGGAagCUUAGGGaCa---GCCC-----UGUCU- -5'
15895 3' -54.8 NC_004065.1 + 36010 0.67 0.947755
Target:  5'- -uCCUgcUCGAuUUUCUGaUCGGGACAGGa -3'
miRNA:   3'- ucGGA--AGCUuAGGGAC-AGCCCUGUCU- -5'
15895 3' -54.8 NC_004065.1 + 198874 0.68 0.934115
Target:  5'- cGGCCgcggcggugUCGAugCCCgaGUCGGaGACGGAg -3'
miRNA:   3'- -UCGGa--------AGCUuaGGGa-CAGCC-CUGUCU- -5'
15895 3' -54.8 NC_004065.1 + 223027 0.68 0.918415
Target:  5'- cGGCUUU---GUCCUgGUCGGGAUAGAu -3'
miRNA:   3'- -UCGGAAgcuUAGGGaCAGCCCUGUCU- -5'
15895 3' -54.8 NC_004065.1 + 20479 0.69 0.906802
Target:  5'- gGGCCUccuUC-AGUCCCgcgGUCGGGAUg-- -3'
miRNA:   3'- -UCGGA---AGcUUAGGGa--CAGCCCUGucu -5'
15895 3' -54.8 NC_004065.1 + 46514 0.7 0.866643
Target:  5'- gAGCCgUUCGAGaCCCUGUCGGucgugcacCGGAg -3'
miRNA:   3'- -UCGG-AAGCUUaGGGACAGCCcu------GUCU- -5'
15895 3' -54.8 NC_004065.1 + 119520 0.76 0.539489
Target:  5'- gAGCCUgUCGAcAUCCUUGUCcGGGGCGGc -3'
miRNA:   3'- -UCGGA-AGCU-UAGGGACAG-CCCUGUCu -5'
15895 3' -54.8 NC_004065.1 + 194387 0.84 0.213311
Target:  5'- cGGUCUUCG--UCCCUGUgGGGACAGAg -3'
miRNA:   3'- -UCGGAAGCuuAGGGACAgCCCUGUCU- -5'
15895 3' -54.8 NC_004065.1 + 35879 1.09 0.006181
Target:  5'- aAGCCUUCGAAUCCCUGUCGGGACAGAc -3'
miRNA:   3'- -UCGGAAGCUUAGGGACAGCCCUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.