Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15895 | 3' | -54.8 | NC_004065.1 | + | 107749 | 0.66 | 0.9793 |
Target: 5'- cGGCCggCGGAUgCCCcaggucggUGUCGGcGCGGGa -3' miRNA: 3'- -UCGGaaGCUUA-GGG--------ACAGCCcUGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 208861 | 0.66 | 0.974568 |
Target: 5'- gAGCCguugCGGAUCCUcGcCGGGGCu-- -3' miRNA: 3'- -UCGGaa--GCUUAGGGaCaGCCCUGucu -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 65608 | 0.66 | 0.966061 |
Target: 5'- uGCCUguacaacUGGAUCCCgGUaCGGcGGCGGAa -3' miRNA: 3'- uCGGAa------GCUUAGGGaCA-GCC-CUGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 139834 | 0.67 | 0.962826 |
Target: 5'- cGGCCUg-GAGUCCCgGgaggCGGGcgacgGCGGAg -3' miRNA: 3'- -UCGGAagCUUAGGGaCa---GCCC-----UGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 198874 | 0.68 | 0.934115 |
Target: 5'- cGGCCgcggcggugUCGAugCCCgaGUCGGaGACGGAg -3' miRNA: 3'- -UCGGa--------AGCUuaGGGa-CAGCC-CUGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 119520 | 0.76 | 0.539489 |
Target: 5'- gAGCCUgUCGAcAUCCUUGUCcGGGGCGGc -3' miRNA: 3'- -UCGGA-AGCU-UAGGGACAG-CCCUGUCu -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 35879 | 1.09 | 0.006181 |
Target: 5'- aAGCCUUCGAAUCCCUGUCGGGACAGAc -3' miRNA: 3'- -UCGGAAGCUUAGGGACAGCCCUGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 31385 | 0.66 | 0.974568 |
Target: 5'- cGGCCggCGGAUCCUcucgGcCGGGACc-- -3' miRNA: 3'- -UCGGaaGCUUAGGGa---CaGCCCUGucu -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 186521 | 0.66 | 0.971652 |
Target: 5'- uGGCCgcCGAGUCCCUGcaguccuUCGGuAgGGAa -3' miRNA: 3'- -UCGGaaGCUUAGGGAC-------AGCCcUgUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 74820 | 0.66 | 0.966061 |
Target: 5'- gAGCgUggaGAcgCCCggGUCGGGACcGAg -3' miRNA: 3'- -UCGgAag-CUuaGGGa-CAGCCCUGuCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 36010 | 0.67 | 0.947755 |
Target: 5'- -uCCUgcUCGAuUUUCUGaUCGGGACAGGa -3' miRNA: 3'- ucGGA--AGCUuAGGGAC-AGCCCUGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 223027 | 0.68 | 0.918415 |
Target: 5'- cGGCUUU---GUCCUgGUCGGGAUAGAu -3' miRNA: 3'- -UCGGAAgcuUAGGGaCAGCCCUGUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 20479 | 0.69 | 0.906802 |
Target: 5'- gGGCCUccuUC-AGUCCCgcgGUCGGGAUg-- -3' miRNA: 3'- -UCGGA---AGcUUAGGGa--CAGCCCUGucu -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 46514 | 0.7 | 0.866643 |
Target: 5'- gAGCCgUUCGAGaCCCUGUCGGucgugcacCGGAg -3' miRNA: 3'- -UCGG-AAGCUUaGGGACAGCCcu------GUCU- -5' |
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15895 | 3' | -54.8 | NC_004065.1 | + | 194387 | 0.84 | 0.213311 |
Target: 5'- cGGUCUUCG--UCCCUGUgGGGACAGAg -3' miRNA: 3'- -UCGGAAGCuuAGGGACAgCCCUGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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