miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15899 3' -56.9 NC_004065.1 + 195792 0.66 0.946871
Target:  5'- --cGGAC--CGCGGGCCCUG-CGcUGa -3'
miRNA:   3'- cuaCCUGuaGUGCCCGGGGCuGCuAC- -5'
15899 3' -56.9 NC_004065.1 + 141350 0.66 0.946871
Target:  5'- --cGGACGucguccgcUCGCGGGUgCUGGCGGc- -3'
miRNA:   3'- cuaCCUGU--------AGUGCCCGgGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 211349 0.66 0.946871
Target:  5'- uGGUGGGCGaaUC-CGGGaCCgCUGGCGAa- -3'
miRNA:   3'- -CUACCUGU--AGuGCCC-GG-GGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 64333 0.66 0.946871
Target:  5'- --cGGGCucaCACGaGGCCCUGG-GAUGg -3'
miRNA:   3'- cuaCCUGua-GUGC-CCGGGGCUgCUAC- -5'
15899 3' -56.9 NC_004065.1 + 78030 0.66 0.942576
Target:  5'- cGAUGG-CGUgCGcCGGGuCCCUGAUGAg- -3'
miRNA:   3'- -CUACCuGUA-GU-GCCC-GGGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 31083 0.66 0.942135
Target:  5'- -cUGGugGcCACGGGCggcgaucagaacgCCCGGCGGc- -3'
miRNA:   3'- cuACCugUaGUGCCCG-------------GGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 115721 0.66 0.938062
Target:  5'- gGAUGGACAUCAgCGcaUCCCGACuGAg- -3'
miRNA:   3'- -CUACCUGUAGU-GCccGGGGCUG-CUac -5'
15899 3' -56.9 NC_004065.1 + 167420 0.66 0.928371
Target:  5'- uGUGuGACAcucaguugugUCugGGGCUUCGACGGg- -3'
miRNA:   3'- cUAC-CUGU----------AGugCCCGGGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 68760 0.66 0.928371
Target:  5'- --cGGACAUCGCGgcGGUgCUGGCGGc- -3'
miRNA:   3'- cuaCCUGUAGUGC--CCGgGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 192340 0.66 0.928371
Target:  5'- --gGGACGUgACGGGCUCCucugucACGAg- -3'
miRNA:   3'- cuaCCUGUAgUGCCCGGGGc-----UGCUac -5'
15899 3' -56.9 NC_004065.1 + 176043 0.66 0.923191
Target:  5'- ---cGACguaacuGUCGCGGGCCCgGugGAa- -3'
miRNA:   3'- cuacCUG------UAGUGCCCGGGgCugCUac -5'
15899 3' -56.9 NC_004065.1 + 146598 0.66 0.923191
Target:  5'- gGGUGGcCAUCG-GGGCCgUCGGCGGg- -3'
miRNA:   3'- -CUACCuGUAGUgCCCGG-GGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 8038 0.66 0.923191
Target:  5'- --cGGuauCGUCuuCGGGUCCCGACGu-- -3'
miRNA:   3'- cuaCCu--GUAGu-GCCCGGGGCUGCuac -5'
15899 3' -56.9 NC_004065.1 + 114857 0.67 0.917789
Target:  5'- --gGaGACGUCggggcGCGGcGCCCgaCGACGAUGg -3'
miRNA:   3'- cuaC-CUGUAG-----UGCC-CGGG--GCUGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 113195 0.67 0.917789
Target:  5'- cAUGGACGacaGCGGcuGCCCCGACa--- -3'
miRNA:   3'- cUACCUGUag-UGCC--CGGGGCUGcuac -5'
15899 3' -56.9 NC_004065.1 + 96663 0.67 0.917789
Target:  5'- ---cGGCGUCgGCGGGCucgCCCGACGGa- -3'
miRNA:   3'- cuacCUGUAG-UGCCCG---GGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 195537 0.67 0.912165
Target:  5'- aGUGGuugGCGUUGCGGGCUCCGucCGGg- -3'
miRNA:   3'- cUACC---UGUAGUGCCCGGGGCu-GCUac -5'
15899 3' -56.9 NC_004065.1 + 170081 0.67 0.906321
Target:  5'- gGGUGG-UGUgAUGGGCUCCGggaacGCGAUGg -3'
miRNA:   3'- -CUACCuGUAgUGCCCGGGGC-----UGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 197758 0.67 0.906321
Target:  5'- --cGGACA--GCGGGCacucggagccgUCCGAUGAUGg -3'
miRNA:   3'- cuaCCUGUagUGCCCG-----------GGGCUGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 197361 0.67 0.905126
Target:  5'- --cGGGCcgauucuccgcCGCGGGCCgUGGCGAUGu -3'
miRNA:   3'- cuaCCUGua---------GUGCCCGGgGCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.