miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15899 3' -56.9 NC_004065.1 + 131330 0.73 0.623393
Target:  5'- -cUGGGCGUCcccaugACGGGUCCCGuCGAUc -3'
miRNA:   3'- cuACCUGUAG------UGCCCGGGGCuGCUAc -5'
15899 3' -56.9 NC_004065.1 + 170081 0.67 0.906321
Target:  5'- gGGUGG-UGUgAUGGGCUCCGggaacGCGAUGg -3'
miRNA:   3'- -CUACCuGUAgUGCCCGGGGC-----UGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 114857 0.67 0.917789
Target:  5'- --gGaGACGUCggggcGCGGcGCCCgaCGACGAUGg -3'
miRNA:   3'- cuaC-CUGUAG-----UGCC-CGGG--GCUGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 113195 0.67 0.917789
Target:  5'- cAUGGACGacaGCGGcuGCCCCGACa--- -3'
miRNA:   3'- cUACCUGUag-UGCC--CGGGGCUGcuac -5'
15899 3' -56.9 NC_004065.1 + 96663 0.67 0.917789
Target:  5'- ---cGGCGUCgGCGGGCucgCCCGACGGa- -3'
miRNA:   3'- cuacCUGUAG-UGCCCG---GGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 176043 0.66 0.923191
Target:  5'- ---cGACguaacuGUCGCGGGCCCgGugGAa- -3'
miRNA:   3'- cuacCUG------UAGUGCCCGGGgCugCUac -5'
15899 3' -56.9 NC_004065.1 + 167420 0.66 0.928371
Target:  5'- uGUGuGACAcucaguugugUCugGGGCUUCGACGGg- -3'
miRNA:   3'- cUAC-CUGU----------AGugCCCGGGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 68760 0.66 0.928371
Target:  5'- --cGGACAUCGCGgcGGUgCUGGCGGc- -3'
miRNA:   3'- cuaCCUGUAGUGC--CCGgGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 192340 0.66 0.928371
Target:  5'- --gGGACGUgACGGGCUCCucugucACGAg- -3'
miRNA:   3'- cuaCCUGUAgUGCCCGGGGc-----UGCUac -5'
15899 3' -56.9 NC_004065.1 + 197361 0.67 0.905126
Target:  5'- --cGGGCcgauucuccgcCGCGGGCCgUGGCGAUGu -3'
miRNA:   3'- cuaCCUGua---------GUGCCCGGgGCUGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 24832 0.67 0.89398
Target:  5'- uGGUGGAgAcgCACGcGGCgCCCGAUGuUGg -3'
miRNA:   3'- -CUACCUgUa-GUGC-CCG-GGGCUGCuAC- -5'
15899 3' -56.9 NC_004065.1 + 229671 0.68 0.873879
Target:  5'- aGGUGGGCGUCG-GGGCgcgcguccgCUCGGCGAUc -3'
miRNA:   3'- -CUACCUGUAGUgCCCG---------GGGCUGCUAc -5'
15899 3' -56.9 NC_004065.1 + 41443 0.71 0.730706
Target:  5'- aGAUGGACGUCcuuuUGGGCCggGACGAg- -3'
miRNA:   3'- -CUACCUGUAGu---GCCCGGggCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 25893 0.7 0.794666
Target:  5'- --aGGuuAUCAC-GGCCCCGGCGGg- -3'
miRNA:   3'- cuaCCugUAGUGcCCGGGGCUGCUac -5'
15899 3' -56.9 NC_004065.1 + 111433 0.69 0.811832
Target:  5'- uGUGaGAUG-CA-GGGCCCCGACGAUa -3'
miRNA:   3'- cUAC-CUGUaGUgCCCGGGGCUGCUAc -5'
15899 3' -56.9 NC_004065.1 + 106607 0.69 0.820192
Target:  5'- --cGGACGgugCGCcgacuccaucaGGGCCCUGACcGAUGg -3'
miRNA:   3'- cuaCCUGUa--GUG-----------CCCGGGGCUG-CUAC- -5'
15899 3' -56.9 NC_004065.1 + 108196 0.68 0.851969
Target:  5'- --cGGACGUCGCaGGGCCCuaucuCGuCGAUc -3'
miRNA:   3'- cuaCCUGUAGUG-CCCGGG-----GCuGCUAc -5'
15899 3' -56.9 NC_004065.1 + 106432 0.68 0.859465
Target:  5'- --cGGGgAUCGCcaGGCCCuUGACGAUGa -3'
miRNA:   3'- cuaCCUgUAGUGc-CCGGG-GCUGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 107460 0.68 0.859465
Target:  5'- --cGGGCGUCugcCGcaggaggaaGGCUCCGACGGUGu -3'
miRNA:   3'- cuaCCUGUAGu--GC---------CCGGGGCUGCUAC- -5'
15899 3' -56.9 NC_004065.1 + 193182 0.68 0.873879
Target:  5'- --cGuGCGUCAUGGGCCCCccucugaucgaGACGAg- -3'
miRNA:   3'- cuaCcUGUAGUGCCCGGGG-----------CUGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.