miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15899 5' -60.4 NC_004065.1 + 65315 0.66 0.815252
Target:  5'- -cCGCGUGGUGGgaCCGGcGGCGgcgGCg -3'
miRNA:   3'- acGUGCACCACCg-GGCUcUCGCa--CGa -5'
15899 5' -60.4 NC_004065.1 + 165511 0.66 0.793277
Target:  5'- cUGCuGCGUGGUGaGCgagagacgaaagaauUCGaAGAGCGUGUg -3'
miRNA:   3'- -ACG-UGCACCAC-CG---------------GGC-UCUCGCACGa -5'
15899 5' -60.4 NC_004065.1 + 113409 0.67 0.7722
Target:  5'- cGCgACGUcGUGGCCaGGGAGC-UGCg -3'
miRNA:   3'- aCG-UGCAcCACCGGgCUCUCGcACGa -5'
15899 5' -60.4 NC_004065.1 + 53395 0.67 0.76322
Target:  5'- cGUACGUGGaGGCgCCGGGcGCccGCUa -3'
miRNA:   3'- aCGUGCACCaCCG-GGCUCuCGcaCGA- -5'
15899 5' -60.4 NC_004065.1 + 174712 0.67 0.754134
Target:  5'- gGCACGUGG-GGCUaugUGAcGGUGUGUUg -3'
miRNA:   3'- aCGUGCACCaCCGG---GCUcUCGCACGA- -5'
15899 5' -60.4 NC_004065.1 + 138302 0.67 0.74495
Target:  5'- gGC-CGUGGacgcGGCCCuGAucGCGUGCg -3'
miRNA:   3'- aCGuGCACCa---CCGGG-CUcuCGCACGa -5'
15899 5' -60.4 NC_004065.1 + 176655 0.67 0.74495
Target:  5'- uUGCaucugGCGUGGUGGaggaCgGAGAGCGU-CUu -3'
miRNA:   3'- -ACG-----UGCACCACCg---GgCUCUCGCAcGA- -5'
15899 5' -60.4 NC_004065.1 + 116 0.67 0.744026
Target:  5'- aGUGCGaugaGGUGGCugcgcgcacgucaCCGAGGGCGUgGCa -3'
miRNA:   3'- aCGUGCa---CCACCG-------------GGCUCUCGCA-CGa -5'
15899 5' -60.4 NC_004065.1 + 162846 0.67 0.735677
Target:  5'- gGUACG-GGUGGUCCGucAGCGccUGCc -3'
miRNA:   3'- aCGUGCaCCACCGGGCucUCGC--ACGa -5'
15899 5' -60.4 NC_004065.1 + 222741 0.67 0.726322
Target:  5'- --aACGUGGUucGGauccgugaCCGGGAGCGUGUg -3'
miRNA:   3'- acgUGCACCA--CCg-------GGCUCUCGCACGa -5'
15899 5' -60.4 NC_004065.1 + 187402 0.69 0.630011
Target:  5'- gGCGCG-GuGUGGCgUCGAGGGCGaGCg -3'
miRNA:   3'- aCGUGCaC-CACCG-GGCUCUCGCaCGa -5'
15899 5' -60.4 NC_004065.1 + 146825 0.69 0.62027
Target:  5'- cGCACG-GG-GGaCUCGAGAGCGgGCc -3'
miRNA:   3'- aCGUGCaCCaCC-GGGCUCUCGCaCGa -5'
15899 5' -60.4 NC_004065.1 + 65444 0.71 0.524306
Target:  5'- gGC-CGUGGUGGCUCuGGAGCGcgaaGCg -3'
miRNA:   3'- aCGuGCACCACCGGGcUCUCGCa---CGa -5'
15899 5' -60.4 NC_004065.1 + 119440 0.71 0.514978
Target:  5'- gUGCGCGUGGUGGUcgCCGAGAccgacgccugGCGgaccGCc -3'
miRNA:   3'- -ACGUGCACCACCG--GGCUCU----------CGCa---CGa -5'
15899 5' -60.4 NC_004065.1 + 105104 0.74 0.354314
Target:  5'- gUGCGCGUGGUGG-CCGAcGA-CGUGCc -3'
miRNA:   3'- -ACGUGCACCACCgGGCU-CUcGCACGa -5'
15899 5' -60.4 NC_004065.1 + 184911 0.76 0.285129
Target:  5'- gGCGCccgGGUGGCUCGGGAGCG-GCc -3'
miRNA:   3'- aCGUGca-CCACCGGGCUCUCGCaCGa -5'
15899 5' -60.4 NC_004065.1 + 64268 0.77 0.243347
Target:  5'- gGaCGCGUGGUG-CCgCGAGGGUGUGCUg -3'
miRNA:   3'- aC-GUGCACCACcGG-GCUCUCGCACGA- -5'
15899 5' -60.4 NC_004065.1 + 142780 0.83 0.094489
Target:  5'- cUGCugGUGGUGGCgCCGGGGGCG-GCc -3'
miRNA:   3'- -ACGugCACCACCG-GGCUCUCGCaCGa -5'
15899 5' -60.4 NC_004065.1 + 34000 1.08 0.00202
Target:  5'- aUGCACGUGGUGGCCCGAGAGCGUGCUa -3'
miRNA:   3'- -ACGUGCACCACCGGGCUCUCGCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.