miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1590 5' -52.7 NC_001347.2 + 87650 0.66 0.995534
Target:  5'- gCCAGcggcgcgCGUgcggaucaGGCCCgACAUCCAGaCCg -3'
miRNA:   3'- -GGUUaa-----GCAa-------CCGGG-UGUAGGUCcGG- -5'
1590 5' -52.7 NC_001347.2 + 161961 0.66 0.995534
Target:  5'- -gGcgUCGggGGUggUCACGUCCAGuccGCCg -3'
miRNA:   3'- ggUuaAGCaaCCG--GGUGUAGGUC---CGG- -5'
1590 5' -52.7 NC_001347.2 + 193741 0.66 0.994033
Target:  5'- aCCGccgcUCGUUGcGCCUACGUagAGGCg -3'
miRNA:   3'- -GGUua--AGCAAC-CGGGUGUAggUCCGg -5'
1590 5' -52.7 NC_001347.2 + 135038 0.66 0.993143
Target:  5'- aCCAA--CGUUGGgUgACcugCCGGGCCc -3'
miRNA:   3'- -GGUUaaGCAACCgGgUGua-GGUCCGG- -5'
1590 5' -52.7 NC_001347.2 + 208060 0.66 0.99215
Target:  5'- --cGUUCGUUGGCgCCGCugccgcgUCGGGUa -3'
miRNA:   3'- gguUAAGCAACCG-GGUGua-----GGUCCGg -5'
1590 5' -52.7 NC_001347.2 + 116739 0.66 0.991046
Target:  5'- ----cUCGgucacGGCCaACAgagCCAGGCCg -3'
miRNA:   3'- gguuaAGCaa---CCGGgUGUa--GGUCCGG- -5'
1590 5' -52.7 NC_001347.2 + 197531 0.67 0.989823
Target:  5'- aCCuuUUCaGUUGGgaCCGCAgCguGGCCg -3'
miRNA:   3'- -GGuuAAG-CAACCg-GGUGUaGguCCGG- -5'
1590 5' -52.7 NC_001347.2 + 109673 0.67 0.989823
Target:  5'- ---------aGGCCgGCAUCCuGGCCc -3'
miRNA:   3'- gguuaagcaaCCGGgUGUAGGuCCGG- -5'
1590 5' -52.7 NC_001347.2 + 209968 0.67 0.989029
Target:  5'- aCCGucagUUGUUGGCguaguugacggagucCCGCAccgCCGGGUCg -3'
miRNA:   3'- -GGUua--AGCAACCG---------------GGUGUa--GGUCCGG- -5'
1590 5' -52.7 NC_001347.2 + 191629 0.67 0.988474
Target:  5'- aCGAcUCGUaGGCCguCAggugCgAGGCCg -3'
miRNA:   3'- gGUUaAGCAaCCGGguGUa---GgUCCGG- -5'
1590 5' -52.7 NC_001347.2 + 196980 0.67 0.988474
Target:  5'- cCCGAgac---GGCgCGCGUCCAGcGCCu -3'
miRNA:   3'- -GGUUaagcaaCCGgGUGUAGGUC-CGG- -5'
1590 5' -52.7 NC_001347.2 + 194475 0.67 0.988474
Target:  5'- gCGggUCGUUGGCucCCGCuGUgCuGGCCg -3'
miRNA:   3'- gGUuaAGCAACCG--GGUG-UAgGuCCGG- -5'
1590 5' -52.7 NC_001347.2 + 210645 0.68 0.979543
Target:  5'- uCCAAgcCGUgGGCCCAC-UgC-GGCCg -3'
miRNA:   3'- -GGUUaaGCAaCCGGGUGuAgGuCCGG- -5'
1590 5' -52.7 NC_001347.2 + 106197 0.68 0.979543
Target:  5'- cCCAAccUUCGgaaucgGGCCCGCcggCCAcGaGCCa -3'
miRNA:   3'- -GGUU--AAGCaa----CCGGGUGua-GGU-C-CGG- -5'
1590 5' -52.7 NC_001347.2 + 91018 0.68 0.979543
Target:  5'- cCCGAacUCGggcUGGCCCACucgugcaaCgAGGCCu -3'
miRNA:   3'- -GGUUa-AGCa--ACCGGGUGua------GgUCCGG- -5'
1590 5' -52.7 NC_001347.2 + 7555 0.68 0.978198
Target:  5'- cCCAGUaUCagcagcacacugGGaaaCCACAUCCAGGCUa -3'
miRNA:   3'- -GGUUA-AGcaa---------CCg--GGUGUAGGUCCGG- -5'
1590 5' -52.7 NC_001347.2 + 183981 0.68 0.977266
Target:  5'- cCCGAUgg---GGCUCGCgAUCCuuGGGCCa -3'
miRNA:   3'- -GGUUAagcaaCCGGGUG-UAGG--UCCGG- -5'
1590 5' -52.7 NC_001347.2 + 207148 0.68 0.977266
Target:  5'- --uGUUUGgcGaGCCCGgAUCCGGGCg -3'
miRNA:   3'- gguUAAGCaaC-CGGGUgUAGGUCCGg -5'
1590 5' -52.7 NC_001347.2 + 222139 0.68 0.974807
Target:  5'- -gGAUUCGgcauUGGUgcgCCGCGUCUuGGCCu -3'
miRNA:   3'- ggUUAAGCa---ACCG---GGUGUAGGuCCGG- -5'
1590 5' -52.7 NC_001347.2 + 164471 0.68 0.974807
Target:  5'- cUCAGguagUCGUgcaUGcGCUgCAgAUCCAGGCCg -3'
miRNA:   3'- -GGUUa---AGCA---AC-CGG-GUgUAGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.