miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 3' -55.3 NC_004065.1 + 181519 0.66 0.983898
Target:  5'- cGUGGGCGuuGACG--GAUGcCUGAuCGg -3'
miRNA:   3'- -CGCCUGCggCUGCuaCUGCuGACU-GC- -5'
15905 3' -55.3 NC_004065.1 + 135826 0.66 0.983898
Target:  5'- uCGG-CGUCGGCGAucUGGCGACcucgucGAUGg -3'
miRNA:   3'- cGCCuGCGGCUGCU--ACUGCUGa-----CUGC- -5'
15905 3' -55.3 NC_004065.1 + 203981 0.66 0.983898
Target:  5'- cGCGGuucgACGCCGcguGCGAgccgcugGugGAC-GACGc -3'
miRNA:   3'- -CGCC----UGCGGC---UGCUa------CugCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 126924 0.66 0.983898
Target:  5'- cUGGAgGCCGG-GAUGGCGA-UGGCc -3'
miRNA:   3'- cGCCUgCGGCUgCUACUGCUgACUGc -5'
15905 3' -55.3 NC_004065.1 + 41744 0.66 0.983898
Target:  5'- gGCGG--GCCGAUGAacuucGugGuGCUGACGa -3'
miRNA:   3'- -CGCCugCGGCUGCUa----CugC-UGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 206604 0.66 0.982052
Target:  5'- gGgGGAUgGCCGACGGuaUGA-GACUGAg- -3'
miRNA:   3'- -CgCCUG-CGGCUGCU--ACUgCUGACUgc -5'
15905 3' -55.3 NC_004065.1 + 121759 0.66 0.982052
Target:  5'- cGCGGACGUCcccauGACGGgucgGACGgaaagcGCcGACGa -3'
miRNA:   3'- -CGCCUGCGG-----CUGCUa---CUGC------UGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 120393 0.66 0.982052
Target:  5'- cGCaGGACGCCcucGACGGUgGugGGCaccGCGg -3'
miRNA:   3'- -CG-CCUGCGG---CUGCUA-CugCUGac-UGC- -5'
15905 3' -55.3 NC_004065.1 + 175768 0.66 0.982052
Target:  5'- cCGGuCGCCGGacgggaGAUGACGauguguGCUGAUu -3'
miRNA:   3'- cGCCuGCGGCUg-----CUACUGC------UGACUGc -5'
15905 3' -55.3 NC_004065.1 + 103123 0.66 0.982052
Target:  5'- aCGG-CGuuGGCGAcGGCGGCUcACGc -3'
miRNA:   3'- cGCCuGCggCUGCUaCUGCUGAcUGC- -5'
15905 3' -55.3 NC_004065.1 + 99387 0.66 0.982052
Target:  5'- aCGGGCGUgGGCugccUGGCGGCgGGCGc -3'
miRNA:   3'- cGCCUGCGgCUGcu--ACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 30077 0.66 0.982052
Target:  5'- -gGGAcCGCCGugGcgGAgCGcgcGCUGAUGu -3'
miRNA:   3'- cgCCU-GCGGCugCuaCU-GC---UGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 26295 0.66 0.982052
Target:  5'- uCGGAUGauGACGAcGACGAUgUGAUGa -3'
miRNA:   3'- cGCCUGCggCUGCUaCUGCUG-ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 128952 0.66 0.982052
Target:  5'- gGCGGGCGCgaGuucuCGGaGAUGACUGcCGu -3'
miRNA:   3'- -CGCCUGCGg-Cu---GCUaCUGCUGACuGC- -5'
15905 3' -55.3 NC_004065.1 + 186351 0.66 0.981859
Target:  5'- cGCGGACGaCGgcauugucguuucGCGGUGauGCGAC-GGCGg -3'
miRNA:   3'- -CGCCUGCgGC-------------UGCUAC--UGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 121528 0.66 0.980052
Target:  5'- cGCGGuCGUCGACGAgGACcAC-GAUGc -3'
miRNA:   3'- -CGCCuGCGGCUGCUaCUGcUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 63890 0.66 0.980052
Target:  5'- cGCcGGCGCCGACGucucUGcCGACgUGAUu -3'
miRNA:   3'- -CGcCUGCGGCUGCu---ACuGCUG-ACUGc -5'
15905 3' -55.3 NC_004065.1 + 118771 0.66 0.980052
Target:  5'- aCGG-CGCCGACGAggcagaGGCGAUcGAgCGu -3'
miRNA:   3'- cGCCuGCGGCUGCUa-----CUGCUGaCU-GC- -5'
15905 3' -55.3 NC_004065.1 + 111725 0.66 0.980052
Target:  5'- aCGaGaACGCCGAUGAgGACGA-UGAUGa -3'
miRNA:   3'- cGC-C-UGCGGCUGCUaCUGCUgACUGC- -5'
15905 3' -55.3 NC_004065.1 + 46910 0.66 0.980052
Target:  5'- -aGGGgGCCG-CGAUGggucACGAC-GACGa -3'
miRNA:   3'- cgCCUgCGGCuGCUAC----UGCUGaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.