miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 3' -55.3 NC_004065.1 + 128952 0.66 0.982052
Target:  5'- gGCGGGCGCgaGuucuCGGaGAUGACUGcCGu -3'
miRNA:   3'- -CGCCUGCGg-Cu---GCUaCUGCUGACuGC- -5'
15905 3' -55.3 NC_004065.1 + 78435 0.66 0.97556
Target:  5'- gGauGACGCCGcacucguCGAUGACGA-UGAUGu -3'
miRNA:   3'- -CgcCUGCGGCu------GCUACUGCUgACUGC- -5'
15905 3' -55.3 NC_004065.1 + 43266 0.66 0.979843
Target:  5'- gGCGGACGaagggggggauguCCGGCG-UGGCGACgaACa -3'
miRNA:   3'- -CGCCUGC-------------GGCUGCuACUGCUGacUGc -5'
15905 3' -55.3 NC_004065.1 + 60525 0.66 0.97789
Target:  5'- cGUGGAUggggguacaGCCGACGAagccgccggaGACGACggaGACGc -3'
miRNA:   3'- -CGCCUG---------CGGCUGCUa---------CUGCUGa--CUGC- -5'
15905 3' -55.3 NC_004065.1 + 21094 0.66 0.973056
Target:  5'- uCGGcCGCCacGACGGagaGACGugUGGCa -3'
miRNA:   3'- cGCCuGCGG--CUGCUa--CUGCugACUGc -5'
15905 3' -55.3 NC_004065.1 + 41744 0.66 0.983898
Target:  5'- gGCGG--GCCGAUGAacuucGugGuGCUGACGa -3'
miRNA:   3'- -CGCCugCGGCUGCUa----CugC-UGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 65698 0.66 0.973056
Target:  5'- cGCGGGCGU--GCGAgcugGugGACgcgcagGACGc -3'
miRNA:   3'- -CGCCUGCGgcUGCUa---CugCUGa-----CUGC- -5'
15905 3' -55.3 NC_004065.1 + 203981 0.66 0.983898
Target:  5'- cGCGGuucgACGCCGcguGCGAgccgcugGugGAC-GACGc -3'
miRNA:   3'- -CGCC----UGCGGC---UGCUa------CugCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 168639 0.66 0.97556
Target:  5'- cGCGGGCggaGCCGGCGc-GGCGACgu-CGu -3'
miRNA:   3'- -CGCCUG---CGGCUGCuaCUGCUGacuGC- -5'
15905 3' -55.3 NC_004065.1 + 33908 0.66 0.97556
Target:  5'- cGCGGAUGCCGuaccCGccGuuGGCgUGGCGa -3'
miRNA:   3'- -CGCCUGCGGCu---GCuaCugCUG-ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 221998 0.66 0.97556
Target:  5'- gGCGGACcgugGUCGugGGUcugguaguagGACGgACUGugGu -3'
miRNA:   3'- -CGCCUG----CGGCugCUA----------CUGC-UGACugC- -5'
15905 3' -55.3 NC_004065.1 + 135826 0.66 0.983898
Target:  5'- uCGG-CGUCGGCGAucUGGCGACcucgucGAUGg -3'
miRNA:   3'- cGCCuGCGGCUGCU--ACUGCUGa-----CUGC- -5'
15905 3' -55.3 NC_004065.1 + 138433 0.66 0.97556
Target:  5'- -aGGACGCCGAUGAgcacauACGAggggGGCGu -3'
miRNA:   3'- cgCCUGCGGCUGCUac----UGCUga--CUGC- -5'
15905 3' -55.3 NC_004065.1 + 26295 0.66 0.982052
Target:  5'- uCGGAUGauGACGAcGACGAUgUGAUGa -3'
miRNA:   3'- cGCCUGCggCUGCUaCUGCUG-ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 189618 0.66 0.97556
Target:  5'- uCGaGAUGaagaagaCGACGAUGACGGCggagGACc -3'
miRNA:   3'- cGC-CUGCg------GCUGCUACUGCUGa---CUGc -5'
15905 3' -55.3 NC_004065.1 + 46910 0.66 0.980052
Target:  5'- -aGGGgGCCG-CGAUGggucACGAC-GACGa -3'
miRNA:   3'- cgCCUgCGGCuGCUAC----UGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 80788 0.66 0.97789
Target:  5'- aGCaGGCGaCGGCGgcGGCGGC-GGCGg -3'
miRNA:   3'- -CGcCUGCgGCUGCuaCUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 181519 0.66 0.983898
Target:  5'- cGUGGGCGuuGACG--GAUGcCUGAuCGg -3'
miRNA:   3'- -CGCCUGCggCUGCuaCUGCuGACU-GC- -5'
15905 3' -55.3 NC_004065.1 + 20722 0.66 0.973056
Target:  5'- aCGG-CaCCGACGgcGACGAC-GGCGa -3'
miRNA:   3'- cGCCuGcGGCUGCuaCUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 144085 0.66 0.973056
Target:  5'- -aGGACGgCGAUGAgaucGGCGACggGAUa -3'
miRNA:   3'- cgCCUGCgGCUGCUa---CUGCUGa-CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.