miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 3' -55.3 NC_004065.1 + 30784 1.12 0.004387
Target:  5'- cGCGGACGCCGACGAUGACGACUGACGg -3'
miRNA:   3'- -CGCCUGCGGCUGCUACUGCUGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 141612 0.85 0.197897
Target:  5'- gGCGGGCuccgcuGCCGGCGGUGGCGGCUcGGCGa -3'
miRNA:   3'- -CGCCUG------CGGCUGCUACUGCUGA-CUGC- -5'
15905 3' -55.3 NC_004065.1 + 105663 0.84 0.238821
Target:  5'- gGCGGAUGCCG-CGGUGACGAUcGACa -3'
miRNA:   3'- -CGCCUGCGGCuGCUACUGCUGaCUGc -5'
15905 3' -55.3 NC_004065.1 + 152313 0.79 0.454868
Target:  5'- gGCGG-UGCCGGCGggGACGA-UGACGg -3'
miRNA:   3'- -CGCCuGCGGCUGCuaCUGCUgACUGC- -5'
15905 3' -55.3 NC_004065.1 + 68226 0.79 0.454868
Target:  5'- aGCGGgugagcGCGUCGGCGGUGACGAg-GACGg -3'
miRNA:   3'- -CGCC------UGCGGCUGCUACUGCUgaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 59758 0.78 0.472667
Target:  5'- cCGcGugGCCGAUGGUGGCGGC-GGCGg -3'
miRNA:   3'- cGC-CugCGGCUGCUACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 32957 0.78 0.481697
Target:  5'- uGCGGGCGUCGACGucgcGGCGGagcaUGACGg -3'
miRNA:   3'- -CGCCUGCGGCUGCua--CUGCUg---ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 135134 0.78 0.49081
Target:  5'- gGCGGGCGCgGcgggUGAUGACGACgggGACGu -3'
miRNA:   3'- -CGCCUGCGgCu---GCUACUGCUGa--CUGC- -5'
15905 3' -55.3 NC_004065.1 + 109251 0.78 0.49081
Target:  5'- aGCGGcguCGgUGACGAUGACGACUcGCGg -3'
miRNA:   3'- -CGCCu--GCgGCUGCUACUGCUGAcUGC- -5'
15905 3' -55.3 NC_004065.1 + 55776 0.77 0.51861
Target:  5'- gGCGGucucgGCGCCGagcagGCGAUcGCGGCUGACGa -3'
miRNA:   3'- -CGCC-----UGCGGC-----UGCUAcUGCUGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 115075 0.76 0.566219
Target:  5'- cUGGAgGCCGGCGgcGcCGACUGAUGa -3'
miRNA:   3'- cGCCUgCGGCUGCuaCuGCUGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 192918 0.76 0.575889
Target:  5'- aGCGGGgGCCGGCucuuuGAUGGCG-CUGACc -3'
miRNA:   3'- -CGCCUgCGGCUG-----CUACUGCuGACUGc -5'
15905 3' -55.3 NC_004065.1 + 118663 0.76 0.605095
Target:  5'- aGCGGgaGCGCCGACGAUGAaGGCggagauccaGGCGa -3'
miRNA:   3'- -CGCC--UGCGGCUGCUACUgCUGa--------CUGC- -5'
15905 3' -55.3 NC_004065.1 + 48094 0.75 0.623688
Target:  5'- cGCGGaccugugGCGgCGGCGGUGGCGGC-GGCGg -3'
miRNA:   3'- -CGCC-------UGCgGCUGCUACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 130881 0.75 0.634466
Target:  5'- uCGGGCGCCGGCGugagguccucAUGAgGugUGugGa -3'
miRNA:   3'- cGCCUGCGGCUGC----------UACUgCugACugC- -5'
15905 3' -55.3 NC_004065.1 + 171958 0.75 0.634466
Target:  5'- gGCGGGCGgUGGCGgcGGCGGC-GGCGg -3'
miRNA:   3'- -CGCCUGCgGCUGCuaCUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 111435 0.75 0.66382
Target:  5'- uGauGACGaCGAUGAUGACGACgagGACGa -3'
miRNA:   3'- -CgcCUGCgGCUGCUACUGCUGa--CUGC- -5'
15905 3' -55.3 NC_004065.1 + 4412 0.74 0.673568
Target:  5'- aGCGGugGCCacGGCGGgccUGACG-CUGACc -3'
miRNA:   3'- -CGCCugCGG--CUGCU---ACUGCuGACUGc -5'
15905 3' -55.3 NC_004065.1 + 22496 0.74 0.673568
Target:  5'- cGCGGAgCGCgCGGCGAgGAgGACcGACGa -3'
miRNA:   3'- -CGCCU-GCG-GCUGCUaCUgCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 132166 0.74 0.673568
Target:  5'- cGUGGugG-CGGCGAUGGCGGacgagaacCUGACGu -3'
miRNA:   3'- -CGCCugCgGCUGCUACUGCU--------GACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.