Results 21 - 40 of 243 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 43266 | 0.66 | 0.979843 |
Target: 5'- gGCGGACGaagggggggauguCCGGCG-UGGCGACgaACa -3' miRNA: 3'- -CGCCUGC-------------GGCUGCuACUGCUGacUGc -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 80788 | 0.66 | 0.97789 |
Target: 5'- aGCaGGCGaCGGCGgcGGCGGC-GGCGg -3' miRNA: 3'- -CGcCUGCgGCUGCuaCUGCUGaCUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 60525 | 0.66 | 0.97789 |
Target: 5'- cGUGGAUggggguacaGCCGACGAagccgccggaGACGACggaGACGc -3' miRNA: 3'- -CGCCUG---------CGGCUGCUa---------CUGCUGa--CUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 33908 | 0.66 | 0.97556 |
Target: 5'- cGCGGAUGCCGuaccCGccGuuGGCgUGGCGa -3' miRNA: 3'- -CGCCUGCGGCu---GCuaCugCUG-ACUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 78435 | 0.66 | 0.97556 |
Target: 5'- gGauGACGCCGcacucguCGAUGACGA-UGAUGu -3' miRNA: 3'- -CgcCUGCGGCu------GCUACUGCUgACUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 189618 | 0.66 | 0.97556 |
Target: 5'- uCGaGAUGaagaagaCGACGAUGACGGCggagGACc -3' miRNA: 3'- cGC-CUGCg------GCUGCUACUGCUGa---CUGc -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 168639 | 0.66 | 0.97556 |
Target: 5'- cGCGGGCggaGCCGGCGc-GGCGACgu-CGu -3' miRNA: 3'- -CGCCUG---CGGCUGCuaCUGCUGacuGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 138433 | 0.66 | 0.97556 |
Target: 5'- -aGGACGCCGAUGAgcacauACGAggggGGCGu -3' miRNA: 3'- cgCCUGCGGCUGCUac----UGCUga--CUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 221998 | 0.66 | 0.97556 |
Target: 5'- gGCGGACcgugGUCGugGGUcugguaguagGACGgACUGugGu -3' miRNA: 3'- -CGCCUG----CGGCugCUA----------CUGC-UGACugC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 21094 | 0.66 | 0.973056 |
Target: 5'- uCGGcCGCCacGACGGagaGACGugUGGCa -3' miRNA: 3'- cGCCuGCGG--CUGCUa--CUGCugACUGc -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 144085 | 0.66 | 0.973056 |
Target: 5'- -aGGACGgCGAUGAgaucGGCGACggGAUa -3' miRNA: 3'- cgCCUGCgGCUGCUa---CUGCUGa-CUGc -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 159466 | 0.66 | 0.973056 |
Target: 5'- uGCGaGACGUCGGCGcguuCGGCggaGACGg -3' miRNA: 3'- -CGC-CUGCGGCUGCuacuGCUGa--CUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 65698 | 0.66 | 0.973056 |
Target: 5'- cGCGGGCGU--GCGAgcugGugGACgcgcagGACGc -3' miRNA: 3'- -CGCCUGCGgcUGCUa---CugCUGa-----CUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 20722 | 0.66 | 0.973056 |
Target: 5'- aCGG-CaCCGACGgcGACGAC-GGCGa -3' miRNA: 3'- cGCCuGcGGCUGCuaCUGCUGaCUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 35612 | 0.67 | 0.970371 |
Target: 5'- uGCGGgauccACGgCGGCGgcGGCGGCgggGAUGu -3' miRNA: 3'- -CGCC-----UGCgGCUGCuaCUGCUGa--CUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 98242 | 0.67 | 0.970371 |
Target: 5'- -aGGGUGCCGACGAcggcucggGACGGCggcccugGGCGc -3' miRNA: 3'- cgCCUGCGGCUGCUa-------CUGCUGa------CUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 98391 | 0.67 | 0.970371 |
Target: 5'- gGUGGugGCgaggagGGCGAUGA-GAgUGGCGg -3' miRNA: 3'- -CGCCugCGg-----CUGCUACUgCUgACUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 23616 | 0.67 | 0.970371 |
Target: 5'- gGCGGGCagGCggGugGAcgGGCGGCUGGCc -3' miRNA: 3'- -CGCCUG--CGg-CugCUa-CUGCUGACUGc -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 109120 | 0.67 | 0.970371 |
Target: 5'- aGgGGACGgaggUGGCGggGACGGCgggUGACGg -3' miRNA: 3'- -CgCCUGCg---GCUGCuaCUGCUG---ACUGC- -5' |
|||||||
15905 | 3' | -55.3 | NC_004065.1 | + | 30714 | 0.67 | 0.970371 |
Target: 5'- -aGGugGCgGACGcguUGAaCGACgugGACGc -3' miRNA: 3'- cgCCugCGgCUGCu--ACU-GCUGa--CUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home