miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 3' -55.3 NC_004065.1 + 4412 0.74 0.673568
Target:  5'- aGCGGugGCCacGGCGGgccUGACG-CUGACc -3'
miRNA:   3'- -CGCCugCGG--CUGCU---ACUGCuGACUGc -5'
15905 3' -55.3 NC_004065.1 + 8748 0.71 0.858944
Target:  5'- cCGGAgGCCGugG-UGGCGGC-GGCa -3'
miRNA:   3'- cGCCUgCGGCugCuACUGCUGaCUGc -5'
15905 3' -55.3 NC_004065.1 + 11816 0.67 0.95736
Target:  5'- uUGGAUGCCGGacggaguCGGUGGCGGggucgGACGg -3'
miRNA:   3'- cGCCUGCGGCU-------GCUACUGCUga---CUGC- -5'
15905 3' -55.3 NC_004065.1 + 16538 0.67 0.964438
Target:  5'- cGUGG-CGUCGACGGUcGCGGC-GACc -3'
miRNA:   3'- -CGCCuGCGGCUGCUAcUGCUGaCUGc -5'
15905 3' -55.3 NC_004065.1 + 19050 0.68 0.94179
Target:  5'- gGCGGugGCCcACaucuGUGACGACgagGAgGa -3'
miRNA:   3'- -CGCCugCGGcUGc---UACUGCUGa--CUgC- -5'
15905 3' -55.3 NC_004065.1 + 19757 0.68 0.937273
Target:  5'- cGgGGGCGUgCGGgGGUGugGGC-GACGg -3'
miRNA:   3'- -CgCCUGCG-GCUgCUACugCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 19923 0.69 0.917018
Target:  5'- aGCGGugG-UGGCGGUGguuACGACgGACa -3'
miRNA:   3'- -CGCCugCgGCUGCUAC---UGCUGaCUGc -5'
15905 3' -55.3 NC_004065.1 + 20722 0.66 0.973056
Target:  5'- aCGG-CaCCGACGgcGACGAC-GGCGa -3'
miRNA:   3'- cGCCuGcGGCUGCuaCUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 21094 0.66 0.973056
Target:  5'- uCGGcCGCCacGACGGagaGACGugUGGCa -3'
miRNA:   3'- cGCCuGCGG--CUGCUa--CUGCugACUGc -5'
15905 3' -55.3 NC_004065.1 + 21931 0.67 0.9675
Target:  5'- uGCuGAUGCUGAUGcUGAUG-CUGAUGg -3'
miRNA:   3'- -CGcCUGCGGCUGCuACUGCuGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 22304 0.7 0.88015
Target:  5'- gGUGGG-GUgGACGGUGACG-UUGACGa -3'
miRNA:   3'- -CGCCUgCGgCUGCUACUGCuGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 22496 0.74 0.673568
Target:  5'- cGCGGAgCGCgCGGCGAgGAgGACcGACGa -3'
miRNA:   3'- -CGCCU-GCG-GCUGCUaCUgCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 23260 0.73 0.740496
Target:  5'- -aGGGgGaCCGACGcgGuACGACUGGCGc -3'
miRNA:   3'- cgCCUgC-GGCUGCuaC-UGCUGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 23467 0.7 0.893285
Target:  5'- cGCGGcuCG-CGACGAUGACGACgc-CGa -3'
miRNA:   3'- -CGCCu-GCgGCUGCUACUGCUGacuGC- -5'
15905 3' -55.3 NC_004065.1 + 23616 0.67 0.970371
Target:  5'- gGCGGGCagGCggGugGAcgGGCGGCUGGCc -3'
miRNA:   3'- -CGCCUG--CGg-CugCUa-CUGCUGACUGc -5'
15905 3' -55.3 NC_004065.1 + 24505 0.67 0.957718
Target:  5'- cCGGcccugaGCGCCGGCcccaaGAUGGCGGCggcagcGACGa -3'
miRNA:   3'- cGCC------UGCGGCUG-----CUACUGCUGa-----CUGC- -5'
15905 3' -55.3 NC_004065.1 + 24845 0.72 0.785863
Target:  5'- cGCGG-CGcCCGAUGuUGGCGGC-GACGg -3'
miRNA:   3'- -CGCCuGC-GGCUGCuACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 26295 0.66 0.982052
Target:  5'- uCGGAUGauGACGAcGACGAUgUGAUGa -3'
miRNA:   3'- cGCCUGCggCUGCUaCUGCUG-ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 26358 0.68 0.94179
Target:  5'- uCGG-CGCUGGCGAcGGCGGCgggGAUa -3'
miRNA:   3'- cGCCuGCGGCUGCUaCUGCUGa--CUGc -5'
15905 3' -55.3 NC_004065.1 + 26564 0.7 0.88682
Target:  5'- uGCGGAC-CCGGcCGAUGugaGACUG-CGg -3'
miRNA:   3'- -CGCCUGcGGCU-GCUACug-CUGACuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.