miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 3' -55.3 NC_004065.1 + 119445 0.72 0.785863
Target:  5'- cGUGGugGUCGcCGAgaccGACGcCUGGCGg -3'
miRNA:   3'- -CGCCugCGGCuGCUa---CUGCuGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 96745 0.73 0.721686
Target:  5'- cGCGGGCGagGGCGAgcagGGCGAC-GGCGg -3'
miRNA:   3'- -CGCCUGCggCUGCUa---CUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 39741 0.73 0.73113
Target:  5'- cCGGAuCGCCGACGAaGGCGACUuuccgcaGCGg -3'
miRNA:   3'- cGCCU-GCGGCUGCUaCUGCUGAc------UGC- -5'
15905 3' -55.3 NC_004065.1 + 200790 0.73 0.740496
Target:  5'- gGCGGugGCgGGCGAcGGCGuCUcGGCGc -3'
miRNA:   3'- -CGCCugCGgCUGCUaCUGCuGA-CUGC- -5'
15905 3' -55.3 NC_004065.1 + 114868 0.73 0.740496
Target:  5'- gGCGcGGCGCCcgacGACGAUGGCGG-UGACc -3'
miRNA:   3'- -CGC-CUGCGG----CUGCUACUGCUgACUGc -5'
15905 3' -55.3 NC_004065.1 + 141980 0.73 0.740496
Target:  5'- cCGGAgGCgaCGGCGAUGACGACgauaccgcGGCGg -3'
miRNA:   3'- cGCCUgCG--GCUGCUACUGCUGa-------CUGC- -5'
15905 3' -55.3 NC_004065.1 + 67749 0.73 0.758959
Target:  5'- aGCGG-CGCCG-CGuccGACGGCgUGACGa -3'
miRNA:   3'- -CGCCuGCGGCuGCua-CUGCUG-ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 114755 0.72 0.777011
Target:  5'- uCGGACGaCGACGAUG-CGAUgacGACGa -3'
miRNA:   3'- cGCCUGCgGCUGCUACuGCUGa--CUGC- -5'
15905 3' -55.3 NC_004065.1 + 24845 0.72 0.785863
Target:  5'- cGCGG-CGcCCGAUGuUGGCGGC-GACGg -3'
miRNA:   3'- -CGCCuGC-GGCUGCuACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 225375 0.74 0.702594
Target:  5'- cUGGACGCCcgcGGCGggGGCG-CUGGCGc -3'
miRNA:   3'- cGCCUGCGG---CUGCuaCUGCuGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 149048 0.74 0.702594
Target:  5'- aGCGGGCGaCGACGgcGGCGGCaGGCc -3'
miRNA:   3'- -CGCCUGCgGCUGCuaCUGCUGaCUGc -5'
15905 3' -55.3 NC_004065.1 + 75472 0.74 0.692962
Target:  5'- aGCaGGACGagGGCGAUGGCGGC-GGCGa -3'
miRNA:   3'- -CG-CCUGCggCUGCUACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 68226 0.79 0.454868
Target:  5'- aGCGGgugagcGCGUCGGCGGUGACGAg-GACGg -3'
miRNA:   3'- -CGCC------UGCGGCUGCUACUGCUgaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 152313 0.79 0.454868
Target:  5'- gGCGG-UGCCGGCGggGACGA-UGACGg -3'
miRNA:   3'- -CGCCuGCGGCUGCuaCUGCUgACUGC- -5'
15905 3' -55.3 NC_004065.1 + 32957 0.78 0.481697
Target:  5'- uGCGGGCGUCGACGucgcGGCGGagcaUGACGg -3'
miRNA:   3'- -CGCCUGCGGCUGCua--CUGCUg---ACUGC- -5'
15905 3' -55.3 NC_004065.1 + 109251 0.78 0.49081
Target:  5'- aGCGGcguCGgUGACGAUGACGACUcGCGg -3'
miRNA:   3'- -CGCCu--GCgGCUGCUACUGCUGAcUGC- -5'
15905 3' -55.3 NC_004065.1 + 135134 0.78 0.49081
Target:  5'- gGCGGGCGCgGcgggUGAUGACGACgggGACGu -3'
miRNA:   3'- -CGCCUGCGgCu---GCUACUGCUGa--CUGC- -5'
15905 3' -55.3 NC_004065.1 + 55776 0.77 0.51861
Target:  5'- gGCGGucucgGCGCCGagcagGCGAUcGCGGCUGACGa -3'
miRNA:   3'- -CGCC-----UGCGGC-----UGCUAcUGCUGACUGC- -5'
15905 3' -55.3 NC_004065.1 + 48094 0.75 0.623688
Target:  5'- cGCGGaccugugGCGgCGGCGGUGGCGGC-GGCGg -3'
miRNA:   3'- -CGCC-------UGCgGCUGCUACUGCUGaCUGC- -5'
15905 3' -55.3 NC_004065.1 + 130881 0.75 0.634466
Target:  5'- uCGGGCGCCGGCGugagguccucAUGAgGugUGugGa -3'
miRNA:   3'- cGCCUGCGGCUGC----------UACUgCugACugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.