miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 5' -53.9 NC_004065.1 + 87269 0.66 0.980586
Target:  5'- --gGCCgUCGUCGUCGCGggagAGACCgCUa -3'
miRNA:   3'- uagCGG-AGCGGUAGUGUa---UUUGGgGA- -5'
15905 5' -53.9 NC_004065.1 + 16707 0.66 0.978367
Target:  5'- --aGCCUC-CCAUCAUccAAACCUCg -3'
miRNA:   3'- uagCGGAGcGGUAGUGuaUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 43653 0.66 0.978367
Target:  5'- --aGCCUcCGCCGUCGCAUc-ACCgCg -3'
miRNA:   3'- uagCGGA-GCGGUAGUGUAuuUGGgGa -5'
15905 5' -53.9 NC_004065.1 + 159535 0.66 0.978367
Target:  5'- -cCGCCaUCGCCuUCACGguguCCCUg -3'
miRNA:   3'- uaGCGG-AGCGGuAGUGUauuuGGGGa -5'
15905 5' -53.9 NC_004065.1 + 63718 0.66 0.975966
Target:  5'- gAUCGCCUgguggucggCGCCGUagACAU-AGCCCUUg -3'
miRNA:   3'- -UAGCGGA---------GCGGUAg-UGUAuUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 141126 0.66 0.973376
Target:  5'- cGUCaGCUUCGCCGUCGagaaGUAcuccAGCUCCa -3'
miRNA:   3'- -UAG-CGGAGCGGUAGUg---UAU----UUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 127860 0.66 0.973375
Target:  5'- cGUCuGCCUCGCCAgguaccUCACc--GugCCCg -3'
miRNA:   3'- -UAG-CGGAGCGGU------AGUGuauUugGGGa -5'
15905 5' -53.9 NC_004065.1 + 221294 0.66 0.973375
Target:  5'- --gGCCUCcgGUCGUCACGUuuucgauaacAGGCCCCc -3'
miRNA:   3'- uagCGGAG--CGGUAGUGUA----------UUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 99442 0.66 0.973375
Target:  5'- -cCGCCUCGaCAUCGCGc--GCCUCg -3'
miRNA:   3'- uaGCGGAGCgGUAGUGUauuUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 91791 0.66 0.970589
Target:  5'- cGUCGUC-CGCCAUgGCGaccuCCCCg -3'
miRNA:   3'- -UAGCGGaGCGGUAgUGUauuuGGGGa -5'
15905 5' -53.9 NC_004065.1 + 79111 0.66 0.970589
Target:  5'- -cCGCCggagcCGCCGUCG----GACCCCUu -3'
miRNA:   3'- uaGCGGa----GCGGUAGUguauUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 32018 0.67 0.967599
Target:  5'- -cCGCCUCcgagGCCAUCGCGcAGugUCCc -3'
miRNA:   3'- uaGCGGAG----CGGUAGUGUaUUugGGGa -5'
15905 5' -53.9 NC_004065.1 + 210963 0.67 0.967599
Target:  5'- gGUCuccuCCUCGUCGUCACAgaugUGGGCCaCCg -3'
miRNA:   3'- -UAGc---GGAGCGGUAGUGU----AUUUGG-GGa -5'
15905 5' -53.9 NC_004065.1 + 94865 0.67 0.9644
Target:  5'- aGUC-CCUCGUCGUCAUcgAcguCCCCg -3'
miRNA:   3'- -UAGcGGAGCGGUAGUGuaUuu-GGGGa -5'
15905 5' -53.9 NC_004065.1 + 157569 0.67 0.9644
Target:  5'- -cCGUCUCGCuCGUCGuacCGUAGAUCCUg -3'
miRNA:   3'- uaGCGGAGCG-GUAGU---GUAUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 174248 0.67 0.962033
Target:  5'- gAUCGCCUgcucggcgccgagacCGCCAUCuuccacucggauaGCAUGugGACCCUg -3'
miRNA:   3'- -UAGCGGA---------------GCGGUAG-------------UGUAU--UUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 123882 0.67 0.960986
Target:  5'- -gCGCCgcaggugCGCCGUgCACGUcgucGCCCCg -3'
miRNA:   3'- uaGCGGa------GCGGUA-GUGUAuu--UGGGGa -5'
15905 5' -53.9 NC_004065.1 + 172231 0.67 0.960986
Target:  5'- cGUCGgguCCUC-CCGUCACGaacGGCCCCUc -3'
miRNA:   3'- -UAGC---GGAGcGGUAGUGUau-UUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 5307 0.67 0.957352
Target:  5'- cGUUGCCUgGCCAacaUC-CGUGGgucgacACCCCUg -3'
miRNA:   3'- -UAGCGGAgCGGU---AGuGUAUU------UGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 146459 0.67 0.957352
Target:  5'- -cCGCCgUCGCCGUCuACuccGugCCCUg -3'
miRNA:   3'- uaGCGG-AGCGGUAG-UGuauUugGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.