miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 5' -53.9 NC_004065.1 + 30822 1.05 0.01043
Target:  5'- cAUCGCCUCGCCAUCACAUAAACCCCUc -3'
miRNA:   3'- -UAGCGGAGCGGUAGUGUAUUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 195485 0.77 0.533623
Target:  5'- aGUCGCuCUCGCUGUCGCGgGAGCCCg- -3'
miRNA:   3'- -UAGCG-GAGCGGUAGUGUaUUUGGGga -5'
15905 5' -53.9 NC_004065.1 + 184914 0.74 0.655371
Target:  5'- aGUCGCCuUCGCCGcCGCuggaGGACCCCg -3'
miRNA:   3'- -UAGCGG-AGCGGUaGUGua--UUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 114689 0.72 0.764714
Target:  5'- gAUCGCC-CGCCucaGCAgcAGCCCCUc -3'
miRNA:   3'- -UAGCGGaGCGGuagUGUauUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 84586 0.71 0.810439
Target:  5'- cAUCGCCUCuCCAUCGCGau--UCCCUa -3'
miRNA:   3'- -UAGCGGAGcGGUAGUGUauuuGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 162432 0.71 0.84416
Target:  5'- -aCGCCgCGCUAUCucgaGCcgAGGCCCCUg -3'
miRNA:   3'- uaGCGGaGCGGUAG----UGuaUUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 146903 0.71 0.852127
Target:  5'- -aCGCCUCGCC--CACAgcu-CCCCg -3'
miRNA:   3'- uaGCGGAGCGGuaGUGUauuuGGGGa -5'
15905 5' -53.9 NC_004065.1 + 196542 0.7 0.874806
Target:  5'- -aCGCCU-GCCggCGCGUAGGCgCCCa -3'
miRNA:   3'- uaGCGGAgCGGuaGUGUAUUUG-GGGa -5'
15905 5' -53.9 NC_004065.1 + 179086 0.7 0.881938
Target:  5'- cAUCuCCUCGCCGcccauguuUCGCGUgcccguGAACCCCg -3'
miRNA:   3'- -UAGcGGAGCGGU--------AGUGUA------UUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 132781 0.7 0.888848
Target:  5'- gGUCGCCagaagCGCCGUgCGCcgGacgcGACCCCg -3'
miRNA:   3'- -UAGCGGa----GCGGUA-GUGuaU----UUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 29484 0.69 0.895532
Target:  5'- -cCGCCcgUCGCCcUCGcCAUGGACgCCCUg -3'
miRNA:   3'- uaGCGG--AGCGGuAGU-GUAUUUG-GGGA- -5'
15905 5' -53.9 NC_004065.1 + 127513 0.69 0.895532
Target:  5'- cGUCGuCCUCuGCCGcCugcuCAUGGGCCCCg -3'
miRNA:   3'- -UAGC-GGAG-CGGUaGu---GUAUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 151395 0.69 0.901985
Target:  5'- cGUCGcCCUCGCCGacCGCGUucACCUCa -3'
miRNA:   3'- -UAGC-GGAGCGGUa-GUGUAuuUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 90177 0.69 0.908205
Target:  5'- -cCGCCUcCGCCGUCGCccgccucccgGGACUCCa -3'
miRNA:   3'- uaGCGGA-GCGGUAGUGua--------UUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 38501 0.69 0.919937
Target:  5'- -aCGCCgUCGCUGUCACcggaguUGAugCCCa -3'
miRNA:   3'- uaGCGG-AGCGGUAGUGu-----AUUugGGGa -5'
15905 5' -53.9 NC_004065.1 + 111114 0.69 0.92705
Target:  5'- cGUCGCCagcuucgUCGCCAUCuggcucgugcgcguCGUcuGCCCCUc -3'
miRNA:   3'- -UAGCGG-------AGCGGUAGu-------------GUAuuUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 99286 0.68 0.930713
Target:  5'- gGUCGCCcaCGaCgAggggCACAUAGGCCCCg -3'
miRNA:   3'- -UAGCGGa-GC-GgUa---GUGUAUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 55872 0.68 0.932754
Target:  5'- uAUCcCCUCGCCGUaucugccagaauuucCACA-AGACCCCg -3'
miRNA:   3'- -UAGcGGAGCGGUA---------------GUGUaUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 196151 0.68 0.944643
Target:  5'- cUCGCCUgggacucCGCCAUCugG-GGGCUCCUc -3'
miRNA:   3'- uAGCGGA-------GCGGUAGugUaUUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 123462 0.68 0.945088
Target:  5'- cGUCGCCcagCGaCCcgCGCugcGAGCCCCa -3'
miRNA:   3'- -UAGCGGa--GC-GGuaGUGua-UUUGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.