Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15905 | 5' | -53.9 | NC_004065.1 | + | 159535 | 0.66 | 0.978367 |
Target: 5'- -cCGCCaUCGCCuUCACGguguCCCUg -3' miRNA: 3'- uaGCGG-AGCGGuAGUGUauuuGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 16707 | 0.66 | 0.978367 |
Target: 5'- --aGCCUC-CCAUCAUccAAACCUCg -3' miRNA: 3'- uagCGGAGcGGUAGUGuaUUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 43653 | 0.66 | 0.978367 |
Target: 5'- --aGCCUcCGCCGUCGCAUc-ACCgCg -3' miRNA: 3'- uagCGGA-GCGGUAGUGUAuuUGGgGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 87269 | 0.66 | 0.980586 |
Target: 5'- --gGCCgUCGUCGUCGCGggagAGACCgCUa -3' miRNA: 3'- uagCGG-AGCGGUAGUGUa---UUUGGgGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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