miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15905 5' -53.9 NC_004065.1 + 5307 0.67 0.957352
Target:  5'- cGUUGCCUgGCCAacaUC-CGUGGgucgacACCCCUg -3'
miRNA:   3'- -UAGCGGAgCGGU---AGuGUAUU------UGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 16707 0.66 0.978367
Target:  5'- --aGCCUC-CCAUCAUccAAACCUCg -3'
miRNA:   3'- uagCGGAGcGGUAGUGuaUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 20642 0.67 0.953494
Target:  5'- uAUCGCCgUCuCCGUCGCA--GGCCUCg -3'
miRNA:   3'- -UAGCGG-AGcGGUAGUGUauUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 29484 0.69 0.895532
Target:  5'- -cCGCCcgUCGCCcUCGcCAUGGACgCCCUg -3'
miRNA:   3'- uaGCGG--AGCGGuAGU-GUAUUUG-GGGA- -5'
15905 5' -53.9 NC_004065.1 + 30822 1.05 0.01043
Target:  5'- cAUCGCCUCGCCAUCACAUAAACCCCUc -3'
miRNA:   3'- -UAGCGGAGCGGUAGUGUAUUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 32018 0.67 0.967599
Target:  5'- -cCGCCUCcgagGCCAUCGCGcAGugUCCc -3'
miRNA:   3'- uaGCGGAG----CGGUAGUGUaUUugGGGa -5'
15905 5' -53.9 NC_004065.1 + 38501 0.69 0.919937
Target:  5'- -aCGCCgUCGCUGUCACcggaguUGAugCCCa -3'
miRNA:   3'- uaGCGG-AGCGGUAGUGu-----AUUugGGGa -5'
15905 5' -53.9 NC_004065.1 + 43653 0.66 0.978367
Target:  5'- --aGCCUcCGCCGUCGCAUc-ACCgCg -3'
miRNA:   3'- uagCGGA-GCGGUAGUGUAuuUGGgGa -5'
15905 5' -53.9 NC_004065.1 + 55872 0.68 0.932754
Target:  5'- uAUCcCCUCGCCGUaucugccagaauuucCACA-AGACCCCg -3'
miRNA:   3'- -UAGcGGAGCGGUA---------------GUGUaUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 63514 0.67 0.953494
Target:  5'- gAUgGCCUCGCCcUCGCggccGUAGAUCgCCg -3'
miRNA:   3'- -UAgCGGAGCGGuAGUG----UAUUUGG-GGa -5'
15905 5' -53.9 NC_004065.1 + 63718 0.66 0.975966
Target:  5'- gAUCGCCUgguggucggCGCCGUagACAU-AGCCCUUg -3'
miRNA:   3'- -UAGCGGA---------GCGGUAg-UGUAuUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 79111 0.66 0.970589
Target:  5'- -cCGCCggagcCGCCGUCG----GACCCCUu -3'
miRNA:   3'- uaGCGGa----GCGGUAGUguauUUGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 84586 0.71 0.810439
Target:  5'- cAUCGCCUCuCCAUCGCGau--UCCCUa -3'
miRNA:   3'- -UAGCGGAGcGGUAGUGUauuuGGGGA- -5'
15905 5' -53.9 NC_004065.1 + 87269 0.66 0.980586
Target:  5'- --gGCCgUCGUCGUCGCGggagAGACCgCUa -3'
miRNA:   3'- uagCGG-AGCGGUAGUGUa---UUUGGgGA- -5'
15905 5' -53.9 NC_004065.1 + 90177 0.69 0.908205
Target:  5'- -cCGCCUcCGCCGUCGCccgccucccgGGACUCCa -3'
miRNA:   3'- uaGCGGA-GCGGUAGUGua--------UUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 91791 0.66 0.970589
Target:  5'- cGUCGUC-CGCCAUgGCGaccuCCCCg -3'
miRNA:   3'- -UAGCGGaGCGGUAgUGUauuuGGGGa -5'
15905 5' -53.9 NC_004065.1 + 94865 0.67 0.9644
Target:  5'- aGUC-CCUCGUCGUCAUcgAcguCCCCg -3'
miRNA:   3'- -UAGcGGAGCGGUAGUGuaUuu-GGGGa -5'
15905 5' -53.9 NC_004065.1 + 99286 0.68 0.930713
Target:  5'- gGUCGCCcaCGaCgAggggCACAUAGGCCCCg -3'
miRNA:   3'- -UAGCGGa-GC-GgUa---GUGUAUUUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 99442 0.66 0.973375
Target:  5'- -cCGCCUCGaCAUCGCGc--GCCUCg -3'
miRNA:   3'- uaGCGGAGCgGUAGUGUauuUGGGGa -5'
15905 5' -53.9 NC_004065.1 + 111114 0.69 0.92705
Target:  5'- cGUCGCCagcuucgUCGCCAUCuggcucgugcgcguCGUcuGCCCCUc -3'
miRNA:   3'- -UAGCGG-------AGCGGUAGu-------------GUAuuUGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.