Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15905 | 5' | -53.9 | NC_004065.1 | + | 172231 | 0.67 | 0.960986 |
Target: 5'- cGUCGgguCCUC-CCGUCACGaacGGCCCCUc -3' miRNA: 3'- -UAGC---GGAGcGGUAGUGUau-UUGGGGA- -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 127513 | 0.69 | 0.895532 |
Target: 5'- cGUCGuCCUCuGCCGcCugcuCAUGGGCCCCg -3' miRNA: 3'- -UAGC-GGAG-CGGUaGu---GUAUUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 43653 | 0.66 | 0.978367 |
Target: 5'- --aGCCUcCGCCGUCGCAUc-ACCgCg -3' miRNA: 3'- uagCGGA-GCGGUAGUGUAuuUGGgGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 16707 | 0.66 | 0.978367 |
Target: 5'- --aGCCUC-CCAUCAUccAAACCUCg -3' miRNA: 3'- uagCGGAGcGGUAGUGuaUUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 196542 | 0.7 | 0.874806 |
Target: 5'- -aCGCCU-GCCggCGCGUAGGCgCCCa -3' miRNA: 3'- uaGCGGAgCGGuaGUGUAUUUG-GGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 151395 | 0.69 | 0.901985 |
Target: 5'- cGUCGcCCUCGCCGacCGCGUucACCUCa -3' miRNA: 3'- -UAGC-GGAGCGGUa-GUGUAuuUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 90177 | 0.69 | 0.908205 |
Target: 5'- -cCGCCUcCGCCGUCGCccgccucccgGGACUCCa -3' miRNA: 3'- uaGCGGA-GCGGUAGUGua--------UUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 38501 | 0.69 | 0.919937 |
Target: 5'- -aCGCCgUCGCUGUCACcggaguUGAugCCCa -3' miRNA: 3'- uaGCGG-AGCGGUAGUGu-----AUUugGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 111114 | 0.69 | 0.92705 |
Target: 5'- cGUCGCCagcuucgUCGCCAUCuggcucgugcgcguCGUcuGCCCCUc -3' miRNA: 3'- -UAGCGG-------AGCGGUAGu-------------GUAuuUGGGGA- -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 123462 | 0.68 | 0.945088 |
Target: 5'- cGUCGCCcagCGaCCcgCGCugcGAGCCCCa -3' miRNA: 3'- -UAGCGGa--GC-GGuaGUGua-UUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 20642 | 0.67 | 0.953494 |
Target: 5'- uAUCGCCgUCuCCGUCGCA--GGCCUCg -3' miRNA: 3'- -UAGCGG-AGcGGUAGUGUauUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 63514 | 0.67 | 0.953494 |
Target: 5'- gAUgGCCUCGCCcUCGCggccGUAGAUCgCCg -3' miRNA: 3'- -UAgCGGAGCGGuAGUG----UAUUUGG-GGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 146459 | 0.67 | 0.957352 |
Target: 5'- -cCGCCgUCGCCGUCuACuccGugCCCUg -3' miRNA: 3'- uaGCGG-AGCGGUAG-UGuauUugGGGA- -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 123882 | 0.67 | 0.960986 |
Target: 5'- -gCGCCgcaggugCGCCGUgCACGUcgucGCCCCg -3' miRNA: 3'- uaGCGGa------GCGGUA-GUGUAuu--UGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 32018 | 0.67 | 0.967599 |
Target: 5'- -cCGCCUCcgagGCCAUCGCGcAGugUCCc -3' miRNA: 3'- uaGCGGAG----CGGUAGUGUaUUugGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 91791 | 0.66 | 0.970589 |
Target: 5'- cGUCGUC-CGCCAUgGCGaccuCCCCg -3' miRNA: 3'- -UAGCGGaGCGGUAgUGUauuuGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 99442 | 0.66 | 0.973375 |
Target: 5'- -cCGCCUCGaCAUCGCGc--GCCUCg -3' miRNA: 3'- uaGCGGAGCgGUAGUGUauuUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 221294 | 0.66 | 0.973375 |
Target: 5'- --gGCCUCcgGUCGUCACGUuuucgauaacAGGCCCCc -3' miRNA: 3'- uagCGGAG--CGGUAGUGUA----------UUUGGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 127860 | 0.66 | 0.973375 |
Target: 5'- cGUCuGCCUCGCCAgguaccUCACc--GugCCCg -3' miRNA: 3'- -UAG-CGGAGCGGU------AGUGuauUugGGGa -5' |
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15905 | 5' | -53.9 | NC_004065.1 | + | 63718 | 0.66 | 0.975966 |
Target: 5'- gAUCGCCUgguggucggCGCCGUagACAU-AGCCCUUg -3' miRNA: 3'- -UAGCGGA---------GCGGUAg-UGUAuUUGGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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