miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15908 3' -53 NC_004065.1 + 143561 0.66 0.990328
Target:  5'- aGAAGAcGggUCUCGCGCUaugGGUGCAgagUGCu -3'
miRNA:   3'- -UUUCUaCa-GGAGCGCGA---CCAUGU---GCG- -5'
15908 3' -53 NC_004065.1 + 153466 0.66 0.990328
Target:  5'- cGGGGUGaCCUCGCGCaUGGccaugACcauCGCc -3'
miRNA:   3'- uUUCUACaGGAGCGCG-ACCa----UGu--GCG- -5'
15908 3' -53 NC_004065.1 + 92529 0.66 0.990328
Target:  5'- --cGGUGuUCCUCGUGCcccGGcgGCACGg -3'
miRNA:   3'- uuuCUAC-AGGAGCGCGa--CCa-UGUGCg -5'
15908 3' -53 NC_004065.1 + 78471 0.66 0.989013
Target:  5'- --uGAUGUCUcCGCGCcGcGUcaaGCGCGCc -3'
miRNA:   3'- uuuCUACAGGaGCGCGaC-CA---UGUGCG- -5'
15908 3' -53 NC_004065.1 + 77097 0.66 0.989013
Target:  5'- uGGAGAUcgaCUCGCGCUGcaaccuGUGCGCGa -3'
miRNA:   3'- -UUUCUAcagGAGCGCGAC------CAUGUGCg -5'
15908 3' -53 NC_004065.1 + 175541 0.66 0.987564
Target:  5'- -----cGUCCUCGaCGgaGGUggcuGCGCGUg -3'
miRNA:   3'- uuucuaCAGGAGC-GCgaCCA----UGUGCG- -5'
15908 3' -53 NC_004065.1 + 64259 0.66 0.987564
Target:  5'- -cGGGUG-CCUgGaCGCgUGGUGC-CGCg -3'
miRNA:   3'- uuUCUACaGGAgC-GCG-ACCAUGuGCG- -5'
15908 3' -53 NC_004065.1 + 100199 0.66 0.987564
Target:  5'- -----gGUCCUCGCGCagcuugaGGUcCACGUc -3'
miRNA:   3'- uuucuaCAGGAGCGCGa------CCAuGUGCG- -5'
15908 3' -53 NC_004065.1 + 75381 0.66 0.985971
Target:  5'- uGGAGGUGauaCUUGuCGC-GGUGCugGCa -3'
miRNA:   3'- -UUUCUACag-GAGC-GCGaCCAUGugCG- -5'
15908 3' -53 NC_004065.1 + 32661 0.66 0.985971
Target:  5'- gGAGGAguUCCUCGCGggcgcGGUucuCGCGCa -3'
miRNA:   3'- -UUUCUacAGGAGCGCga---CCAu--GUGCG- -5'
15908 3' -53 NC_004065.1 + 33985 0.67 0.982321
Target:  5'- --cGAUGg-CUCGCGCUcaUGCACGUg -3'
miRNA:   3'- uuuCUACagGAGCGCGAccAUGUGCG- -5'
15908 3' -53 NC_004065.1 + 159571 0.67 0.980248
Target:  5'- uGAAGGUGUCCUCGgGUUugaucGU-CACGUc -3'
miRNA:   3'- -UUUCUACAGGAGCgCGAc----CAuGUGCG- -5'
15908 3' -53 NC_004065.1 + 92687 0.67 0.972945
Target:  5'- -cGGAUGUUCUCGgGCcGGUuCAUGg -3'
miRNA:   3'- uuUCUACAGGAGCgCGaCCAuGUGCg -5'
15908 3' -53 NC_004065.1 + 54024 0.68 0.970124
Target:  5'- cGGAGAUuagGUCUUCGCGgaGG-GCGCGa -3'
miRNA:   3'- -UUUCUA---CAGGAGCGCgaCCaUGUGCg -5'
15908 3' -53 NC_004065.1 + 71297 0.68 0.970124
Target:  5'- --cGAUGg-C-CGCGCUGGUcGCACGUc -3'
miRNA:   3'- uuuCUACagGaGCGCGACCA-UGUGCG- -5'
15908 3' -53 NC_004065.1 + 126154 0.68 0.96983
Target:  5'- cGAGAaGUCCgccaugaUCGCG-UGGUGCGCGa -3'
miRNA:   3'- uUUCUaCAGG-------AGCGCgACCAUGUGCg -5'
15908 3' -53 NC_004065.1 + 109416 0.68 0.967099
Target:  5'- aAGAGGUGgcucuacaaCCagcCGCGCUGGcgGCGCGUg -3'
miRNA:   3'- -UUUCUACa--------GGa--GCGCGACCa-UGUGCG- -5'
15908 3' -53 NC_004065.1 + 160590 0.68 0.967099
Target:  5'- --cGAUGUCCgUCGaguccaGCaGGUcgGCGCGCa -3'
miRNA:   3'- uuuCUACAGG-AGCg-----CGaCCA--UGUGCG- -5'
15908 3' -53 NC_004065.1 + 31322 0.68 0.960411
Target:  5'- cGGGGUGUcCCUCGUGCUGu--CGgGCg -3'
miRNA:   3'- uUUCUACA-GGAGCGCGACcauGUgCG- -5'
15908 3' -53 NC_004065.1 + 169628 0.69 0.95284
Target:  5'- uGGAGucccugGUCCgcgaCGCGgUGGUGCugGUa -3'
miRNA:   3'- -UUUCua----CAGGa---GCGCgACCAUGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.