miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15908 5' -61.2 NC_004065.1 + 68356 0.66 0.830466
Target:  5'- gCGGCGUCggacgugACCGcgcuagguaGGAUACCuGGaGUGUa -3'
miRNA:   3'- -GCCGCAGa------UGGC---------CCUGUGGcCC-CACA- -5'
15908 5' -61.2 NC_004065.1 + 107461 0.66 0.830466
Target:  5'- gGGCGUCUGCCGcaggaGGAaggcuCCGacGGUGUa -3'
miRNA:   3'- gCCGCAGAUGGC-----CCUgu---GGCc-CCACA- -5'
15908 5' -61.2 NC_004065.1 + 176484 0.66 0.822598
Target:  5'- aGGCGgaggC-ACCGGGACGgU-GGGUGUc -3'
miRNA:   3'- gCCGCa---GaUGGCCCUGUgGcCCCACA- -5'
15908 5' -61.2 NC_004065.1 + 109881 0.66 0.822598
Target:  5'- cCGGCGUC-GCCGcGGccGCGUCGGGGgGUc -3'
miRNA:   3'- -GCCGCAGaUGGC-CC--UGUGGCCCCaCA- -5'
15908 5' -61.2 NC_004065.1 + 182723 0.66 0.822598
Target:  5'- uCGGCcUC-ACgGGcGACGCCGGGGc-- -3'
miRNA:   3'- -GCCGcAGaUGgCC-CUGUGGCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 212823 0.66 0.814581
Target:  5'- uGGCG-CUGCUcaaGGGAC-CUGGGGa-- -3'
miRNA:   3'- gCCGCaGAUGG---CCCUGuGGCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 164125 0.66 0.805595
Target:  5'- gGGCGUCUGCCGaGAucgagcaaacguuCACCGacGGUGg -3'
miRNA:   3'- gCCGCAGAUGGCcCU-------------GUGGCc-CCACa -5'
15908 5' -61.2 NC_004065.1 + 82782 0.66 0.798121
Target:  5'- aGGCGU---CCGGuGGCGCCgacccauccgGGGGUGg -3'
miRNA:   3'- gCCGCAgauGGCC-CUGUGG----------CCCCACa -5'
15908 5' -61.2 NC_004065.1 + 178010 0.66 0.798121
Target:  5'- -cGCGUCUugCGGGACAUCaGGa--- -3'
miRNA:   3'- gcCGCAGAugGCCCUGUGGcCCcaca -5'
15908 5' -61.2 NC_004065.1 + 30460 0.66 0.798121
Target:  5'- gCGGCGUCUggACCGcGGCACgaUGGGGc-- -3'
miRNA:   3'- -GCCGCAGA--UGGCcCUGUG--GCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 78050 0.66 0.781141
Target:  5'- -uGCGUCaggUCGGcGugAUCGGGGUGUa -3'
miRNA:   3'- gcCGCAGau-GGCC-CugUGGCCCCACA- -5'
15908 5' -61.2 NC_004065.1 + 200804 0.66 0.781141
Target:  5'- aCGGCGUCUcggcGCgGGGAUcggaCGGGGcGa -3'
miRNA:   3'- -GCCGCAGA----UGgCCCUGug--GCCCCaCa -5'
15908 5' -61.2 NC_004065.1 + 67631 0.67 0.736796
Target:  5'- aCGGCGUUcgagaUGCCGGuGGCGUCGagcGGGUGUc -3'
miRNA:   3'- -GCCGCAG-----AUGGCC-CUGUGGC---CCCACA- -5'
15908 5' -61.2 NC_004065.1 + 177481 0.67 0.736796
Target:  5'- uCGGCGggggCgcacgGCgGGGcCGCCGGGGg-- -3'
miRNA:   3'- -GCCGCa---Ga----UGgCCCuGUGGCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 200828 0.67 0.734063
Target:  5'- gGGCGUCaugcagcuauucacuCUGGGACuCCGGGGa-- -3'
miRNA:   3'- gCCGCAGau-------------GGCCCUGuGGCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 142775 0.67 0.72766
Target:  5'- aCGGCcugCUGgUGGuGGCGCCGGGGg-- -3'
miRNA:   3'- -GCCGca-GAUgGCC-CUGUGGCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 83579 0.68 0.718454
Target:  5'- aCGGCGaCgGCgGGGAaGCCGGGGa-- -3'
miRNA:   3'- -GCCGCaGaUGgCCCUgUGGCCCCaca -5'
15908 5' -61.2 NC_004065.1 + 143299 0.74 0.35493
Target:  5'- gCGGCGUCggggGCCGGGGCAggaGGGGa-- -3'
miRNA:   3'- -GCCGCAGa---UGGCCCUGUgg-CCCCaca -5'
15908 5' -61.2 NC_004065.1 + 200857 0.77 0.251507
Target:  5'- uCGGCGUCgACgGGGGCGCgGGcGGUGg -3'
miRNA:   3'- -GCCGCAGaUGgCCCUGUGgCC-CCACa -5'
15908 5' -61.2 NC_004065.1 + 28382 1.06 0.002881
Target:  5'- uCGGCGUCUACCGGGACACCGGGGUGUu -3'
miRNA:   3'- -GCCGCAGAUGGCCCUGUGGCCCCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.