miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15913 3' -49 NC_004065.1 + 56147 0.66 0.999865
Target:  5'- gGCGGCccacacaCACGGCGUGACG-GCGc -3'
miRNA:   3'- -CGCCGacaa---GUGUUGCACUGUaUGCu -5'
15913 3' -49 NC_004065.1 + 140101 0.66 0.999865
Target:  5'- cGUGuGCagGUUCGCcAUG-GACGUGCGGa -3'
miRNA:   3'- -CGC-CGa-CAAGUGuUGCaCUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 105432 0.66 0.999865
Target:  5'- cCGcGCUGgugCGgGACGUGGCGacggACGAg -3'
miRNA:   3'- cGC-CGACaa-GUgUUGCACUGUa---UGCU- -5'
15913 3' -49 NC_004065.1 + 166126 0.66 0.999826
Target:  5'- aGCGuCUGUUC-CAgguugagggcucGgGUGACGUGCGGg -3'
miRNA:   3'- -CGCcGACAAGuGU------------UgCACUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 60404 0.66 0.999826
Target:  5'- -aGGCcgGUUCcgacgagguuaaGCGACGUGACGgcccccGCGAa -3'
miRNA:   3'- cgCCGa-CAAG------------UGUUGCACUGUa-----UGCU- -5'
15913 3' -49 NC_004065.1 + 197585 0.66 0.999813
Target:  5'- uGCGGCUGcgcuacuacgacccUUCGaguACGUcGACAUGCuGAg -3'
miRNA:   3'- -CGCCGAC--------------AAGUgu-UGCA-CUGUAUG-CU- -5'
15913 3' -49 NC_004065.1 + 132826 0.66 0.999779
Target:  5'- -aGGCUGgccuacaggCGCAGCGcGACG-ACGAg -3'
miRNA:   3'- cgCCGACaa-------GUGUUGCaCUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 135140 0.66 0.999779
Target:  5'- cGCGGCggGUgaUgACGACGggGACGU-CGAu -3'
miRNA:   3'- -CGCCGa-CA--AgUGUUGCa-CUGUAuGCU- -5'
15913 3' -49 NC_004065.1 + 173856 0.66 0.999721
Target:  5'- cCGGCUGggucUUCAC--CGUGAUcgAUGCGAc -3'
miRNA:   3'- cGCCGAC----AAGUGuuGCACUG--UAUGCU- -5'
15913 3' -49 NC_004065.1 + 168546 0.66 0.999721
Target:  5'- aGCGGCgGUggUgGCAGCGgcGGCGgcgGCGAc -3'
miRNA:   3'- -CGCCGaCA--AgUGUUGCa-CUGUa--UGCU- -5'
15913 3' -49 NC_004065.1 + 157384 0.66 0.999721
Target:  5'- uCGGCcGUUUACGAuguuCGUGACAUG-GAu -3'
miRNA:   3'- cGCCGaCAAGUGUU----GCACUGUAUgCU- -5'
15913 3' -49 NC_004065.1 + 119589 0.67 0.999649
Target:  5'- aCGGCUGgcCugGACGUGcaggacGCcgGCGGc -3'
miRNA:   3'- cGCCGACaaGugUUGCAC------UGuaUGCU- -5'
15913 3' -49 NC_004065.1 + 193523 0.67 0.999649
Target:  5'- cGCGGCUGgcUACGAUGuUGACuaAgGAa -3'
miRNA:   3'- -CGCCGACaaGUGUUGC-ACUGuaUgCU- -5'
15913 3' -49 NC_004065.1 + 59767 0.67 0.999562
Target:  5'- gGCGGCUGUUgaGC-ACG-GGCAgcucgACGGg -3'
miRNA:   3'- -CGCCGACAAg-UGuUGCaCUGUa----UGCU- -5'
15913 3' -49 NC_004065.1 + 66626 0.67 0.999562
Target:  5'- cGCgGGCUGcggCGCuGCGUGGCGgACGc -3'
miRNA:   3'- -CG-CCGACaa-GUGuUGCACUGUaUGCu -5'
15913 3' -49 NC_004065.1 + 19047 0.67 0.999457
Target:  5'- gGCGGCgGUggccCACAucUGUGACG-ACGAg -3'
miRNA:   3'- -CGCCGaCAa---GUGUu-GCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 117406 0.67 0.999457
Target:  5'- cGCGcGCUGggcUCGCGGCGcggagUGGCAgcCGAu -3'
miRNA:   3'- -CGC-CGACa--AGUGUUGC-----ACUGUauGCU- -5'
15913 3' -49 NC_004065.1 + 105094 0.67 0.99933
Target:  5'- cGCGaacCUGgugCGCGugGUGGCcgACGAc -3'
miRNA:   3'- -CGCc--GACaa-GUGUugCACUGuaUGCU- -5'
15913 3' -49 NC_004065.1 + 30507 0.67 0.99933
Target:  5'- cCGGCUGcgCGC-ACGUGGCGgcCGc -3'
miRNA:   3'- cGCCGACaaGUGuUGCACUGUauGCu -5'
15913 3' -49 NC_004065.1 + 126 0.67 0.99933
Target:  5'- gGUGGCUGcgCGCAcgucaccgaggGCGUGGCAccgUGCc- -3'
miRNA:   3'- -CGCCGACaaGUGU-----------UGCACUGU---AUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.