miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15913 3' -49 NC_004065.1 + 21807 1.13 0.012967
Target:  5'- cGCGGCUGUUCACAACGUGACAUACGAg -3'
miRNA:   3'- -CGCCGACAAGUGUUGCACUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 52654 0.8 0.735686
Target:  5'- cCGGCUGcacauccgacgcuaGCAACGUGACGUGCGAg -3'
miRNA:   3'- cGCCGACaag-----------UGUUGCACUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 58192 0.75 0.91185
Target:  5'- uGuuGCUGUUgGCGACG-GGCAUGCGGu -3'
miRNA:   3'- -CgcCGACAAgUGUUGCaCUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 164758 0.74 0.952383
Target:  5'- cGCGGCcGUgCGguACGUGGCGUGCa- -3'
miRNA:   3'- -CGCCGaCAaGUguUGCACUGUAUGcu -5'
15913 3' -49 NC_004065.1 + 216881 0.73 0.966919
Target:  5'- aCGGUcGUUCGCGGCGgcgcGAgGUGCGAg -3'
miRNA:   3'- cGCCGaCAAGUGUUGCa---CUgUAUGCU- -5'
15913 3' -49 NC_004065.1 + 104880 0.73 0.969997
Target:  5'- uGCGGCUGaUCGCcACGcGGCuggGCGAc -3'
miRNA:   3'- -CGCCGACaAGUGuUGCaCUGua-UGCU- -5'
15913 3' -49 NC_004065.1 + 214537 0.72 0.975529
Target:  5'- -aGGUcGUUCGCAcCGUG-CAUACGAg -3'
miRNA:   3'- cgCCGaCAAGUGUuGCACuGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 228321 0.72 0.980276
Target:  5'- gGCGGgUGcUUugGGCGguggGACGUACGGa -3'
miRNA:   3'- -CGCCgACaAGugUUGCa---CUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 141152 0.72 0.982375
Target:  5'- uGCGGCgucggUCACuucGACGUGACGccUAUGAa -3'
miRNA:   3'- -CGCCGaca--AGUG---UUGCACUGU--AUGCU- -5'
15913 3' -49 NC_004065.1 + 182562 0.72 0.982375
Target:  5'- gGCGGCUGUUC-CAAUaUGGCGgAUGGg -3'
miRNA:   3'- -CGCCGACAAGuGUUGcACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 222942 0.7 0.991527
Target:  5'- cGCGGCUGgacgUCgguaucgGCGAUGUGugGUugACGGu -3'
miRNA:   3'- -CGCCGACa---AG-------UGUUGCACugUA--UGCU- -5'
15913 3' -49 NC_004065.1 + 90399 0.7 0.991641
Target:  5'- cCGGC-GUUCACGAUGUGACugaACa- -3'
miRNA:   3'- cGCCGaCAAGUGUUGCACUGua-UGcu -5'
15913 3' -49 NC_004065.1 + 67749 0.7 0.991641
Target:  5'- aGCGGCgccgcgUCcgACGGCGUGACGaACGGc -3'
miRNA:   3'- -CGCCGaca---AG--UGUUGCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 48120 0.7 0.994525
Target:  5'- gGCGGCgGUgggaccUCGCGcACGUugccGACGUGCGGa -3'
miRNA:   3'- -CGCCGaCA------AGUGU-UGCA----CUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 59322 0.69 0.995955
Target:  5'- aGCGGCaa-UCGCGccGCGggcGGCGUGCGAu -3'
miRNA:   3'- -CGCCGacaAGUGU--UGCa--CUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 193864 0.69 0.995955
Target:  5'- aGCGGCUGa-CACAGCGccgcugGACuaGCGAu -3'
miRNA:   3'- -CGCCGACaaGUGUUGCa-----CUGuaUGCU- -5'
15913 3' -49 NC_004065.1 + 131830 0.69 0.996545
Target:  5'- -gGGCUGUgguagaACAGCGUcucGGCGUGCGc -3'
miRNA:   3'- cgCCGACAag----UGUUGCA---CUGUAUGCu -5'
15913 3' -49 NC_004065.1 + 103960 0.69 0.996545
Target:  5'- aGCGGCUGaccUUCACcgaGACGcagaugGACGUGCuGAa -3'
miRNA:   3'- -CGCCGAC---AAGUG---UUGCa-----CUGUAUG-CU- -5'
15913 3' -49 NC_004065.1 + 28282 0.69 0.997063
Target:  5'- cGCGuGCUGUgcUC-CGAgGUGGCGaACGAg -3'
miRNA:   3'- -CGC-CGACA--AGuGUUgCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 140442 0.68 0.997757
Target:  5'- cGCGGCUGUUgcCGCGGCcgaaguaagGUGACGgggggagaugaggACGAg -3'
miRNA:   3'- -CGCCGACAA--GUGUUG---------CACUGUa------------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.