miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15913 3' -49 NC_004065.1 + 126 0.67 0.99933
Target:  5'- gGUGGCUGcgCGCAcgucaccgaggGCGUGGCAccgUGCc- -3'
miRNA:   3'- -CGCCGACaaGUGU-----------UGCACUGU---AUGcu -5'
15913 3' -49 NC_004065.1 + 19047 0.67 0.999457
Target:  5'- gGCGGCgGUggccCACAucUGUGACG-ACGAg -3'
miRNA:   3'- -CGCCGaCAa---GUGUu-GCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 21807 1.13 0.012967
Target:  5'- cGCGGCUGUUCACAACGUGACAUACGAg -3'
miRNA:   3'- -CGCCGACAAGUGUUGCACUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 27210 0.67 0.999179
Target:  5'- gGCGGCggucgugGUcgGCAGCGUGuugAUACGAa -3'
miRNA:   3'- -CGCCGa------CAagUGUUGCACug-UAUGCU- -5'
15913 3' -49 NC_004065.1 + 28282 0.69 0.997063
Target:  5'- cGCGuGCUGUgcUC-CGAgGUGGCGaACGAg -3'
miRNA:   3'- -CGC-CGACA--AGuGUUgCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 30507 0.67 0.99933
Target:  5'- cCGGCUGcgCGC-ACGUGGCGgcCGc -3'
miRNA:   3'- cGCCGACaaGUGuUGCACUGUauGCu -5'
15913 3' -49 NC_004065.1 + 33769 0.68 0.99898
Target:  5'- aGUGGCUGUgUCGCcgggaccgcuuucGGCccGACAUGCGGa -3'
miRNA:   3'- -CGCCGACA-AGUG-------------UUGcaCUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 40345 0.68 0.999
Target:  5'- aCGGCUGUUCGUGACGUcGAC-UGCc- -3'
miRNA:   3'- cGCCGACAAGUGUUGCA-CUGuAUGcu -5'
15913 3' -49 NC_004065.1 + 48120 0.7 0.994525
Target:  5'- gGCGGCgGUgggaccUCGCGcACGUugccGACGUGCGGa -3'
miRNA:   3'- -CGCCGaCA------AGUGU-UGCA----CUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 52654 0.8 0.735686
Target:  5'- cCGGCUGcacauccgacgcuaGCAACGUGACGUGCGAg -3'
miRNA:   3'- cGCCGACaag-----------UGUUGCACUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 56147 0.66 0.999865
Target:  5'- gGCGGCccacacaCACGGCGUGACG-GCGc -3'
miRNA:   3'- -CGCCGacaa---GUGUUGCACUGUaUGCu -5'
15913 3' -49 NC_004065.1 + 58192 0.75 0.91185
Target:  5'- uGuuGCUGUUgGCGACG-GGCAUGCGGu -3'
miRNA:   3'- -CgcCGACAAgUGUUGCaCUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 59322 0.69 0.995955
Target:  5'- aGCGGCaa-UCGCGccGCGggcGGCGUGCGAu -3'
miRNA:   3'- -CGCCGacaAGUGU--UGCa--CUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 59767 0.67 0.999562
Target:  5'- gGCGGCUGUUgaGC-ACG-GGCAgcucgACGGg -3'
miRNA:   3'- -CGCCGACAAg-UGuUGCaCUGUa----UGCU- -5'
15913 3' -49 NC_004065.1 + 60404 0.66 0.999826
Target:  5'- -aGGCcgGUUCcgacgagguuaaGCGACGUGACGgcccccGCGAa -3'
miRNA:   3'- cgCCGa-CAAG------------UGUUGCACUGUa-----UGCU- -5'
15913 3' -49 NC_004065.1 + 65504 0.68 0.997907
Target:  5'- cCGGCUGUUCGCGcuGCGcuACG-ACGAa -3'
miRNA:   3'- cGCCGACAAGUGU--UGCacUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 66626 0.67 0.999562
Target:  5'- cGCgGGCUGcggCGCuGCGUGGCGgACGc -3'
miRNA:   3'- -CG-CCGACaa-GUGuUGCACUGUaUGCu -5'
15913 3' -49 NC_004065.1 + 67749 0.7 0.991641
Target:  5'- aGCGGCgccgcgUCcgACGGCGUGACGaACGGc -3'
miRNA:   3'- -CGCCGaca---AG--UGUUGCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 85567 0.68 0.997907
Target:  5'- uCGGCgccaugGUcgccuUCGCGAuCGUGGCGUGCGu -3'
miRNA:   3'- cGCCGa-----CA-----AGUGUU-GCACUGUAUGCu -5'
15913 3' -49 NC_004065.1 + 90399 0.7 0.991641
Target:  5'- cCGGC-GUUCACGAUGUGACugaACa- -3'
miRNA:   3'- cGCCGaCAAGUGUUGCACUGua-UGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.