miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15913 3' -49 NC_004065.1 + 135140 0.66 0.999779
Target:  5'- cGCGGCggGUgaUgACGACGggGACGU-CGAu -3'
miRNA:   3'- -CGCCGa-CA--AgUGUUGCa-CUGUAuGCU- -5'
15913 3' -49 NC_004065.1 + 65504 0.68 0.997907
Target:  5'- cCGGCUGUUCGCGcuGCGcuACG-ACGAa -3'
miRNA:   3'- cGCCGACAAGUGU--UGCacUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 128553 0.68 0.999
Target:  5'- uGUGGCUGUgucugcgccCGCAGCGgcagcGACGUcgGCGGc -3'
miRNA:   3'- -CGCCGACAa--------GUGUUGCa----CUGUA--UGCU- -5'
15913 3' -49 NC_004065.1 + 126 0.67 0.99933
Target:  5'- gGUGGCUGcgCGCAcgucaccgaggGCGUGGCAccgUGCc- -3'
miRNA:   3'- -CGCCGACaaGUGU-----------UGCACUGU---AUGcu -5'
15913 3' -49 NC_004065.1 + 19047 0.67 0.999457
Target:  5'- gGCGGCgGUggccCACAucUGUGACG-ACGAg -3'
miRNA:   3'- -CGCCGaCAa---GUGUu-GCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 117406 0.67 0.999457
Target:  5'- cGCGcGCUGggcUCGCGGCGcggagUGGCAgcCGAu -3'
miRNA:   3'- -CGC-CGACa--AGUGUUGC-----ACUGUauGCU- -5'
15913 3' -49 NC_004065.1 + 59767 0.67 0.999562
Target:  5'- gGCGGCUGUUgaGC-ACG-GGCAgcucgACGGg -3'
miRNA:   3'- -CGCCGACAAg-UGuUGCaCUGUa----UGCU- -5'
15913 3' -49 NC_004065.1 + 66626 0.67 0.999562
Target:  5'- cGCgGGCUGcggCGCuGCGUGGCGgACGc -3'
miRNA:   3'- -CG-CCGACaa-GUGuUGCACUGUaUGCu -5'
15913 3' -49 NC_004065.1 + 168546 0.66 0.999721
Target:  5'- aGCGGCgGUggUgGCAGCGgcGGCGgcgGCGAc -3'
miRNA:   3'- -CGCCGaCA--AgUGUUGCa-CUGUa--UGCU- -5'
15913 3' -49 NC_004065.1 + 140442 0.68 0.997757
Target:  5'- cGCGGCUGUUgcCGCGGCcgaaguaagGUGACGgggggagaugaggACGAg -3'
miRNA:   3'- -CGCCGACAA--GUGUUG---------CACUGUa------------UGCU- -5'
15913 3' -49 NC_004065.1 + 28282 0.69 0.997063
Target:  5'- cGCGuGCUGUgcUC-CGAgGUGGCGaACGAg -3'
miRNA:   3'- -CGC-CGACA--AGuGUUgCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 131830 0.69 0.996545
Target:  5'- -gGGCUGUgguagaACAGCGUcucGGCGUGCGc -3'
miRNA:   3'- cgCCGACAag----UGUUGCA---CUGUAUGCu -5'
15913 3' -49 NC_004065.1 + 216881 0.73 0.966919
Target:  5'- aCGGUcGUUCGCGGCGgcgcGAgGUGCGAg -3'
miRNA:   3'- cGCCGaCAAGUGUUGCa---CUgUAUGCU- -5'
15913 3' -49 NC_004065.1 + 214537 0.72 0.975529
Target:  5'- -aGGUcGUUCGCAcCGUG-CAUACGAg -3'
miRNA:   3'- cgCCGaCAAGUGUuGCACuGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 141152 0.72 0.982375
Target:  5'- uGCGGCgucggUCACuucGACGUGACGccUAUGAa -3'
miRNA:   3'- -CGCCGaca--AGUG---UUGCACUGU--AUGCU- -5'
15913 3' -49 NC_004065.1 + 182562 0.72 0.982375
Target:  5'- gGCGGCUGUUC-CAAUaUGGCGgAUGGg -3'
miRNA:   3'- -CGCCGACAAGuGUUGcACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 67749 0.7 0.991641
Target:  5'- aGCGGCgccgcgUCcgACGGCGUGACGaACGGc -3'
miRNA:   3'- -CGCCGaca---AG--UGUUGCACUGUaUGCU- -5'
15913 3' -49 NC_004065.1 + 90399 0.7 0.991641
Target:  5'- cCGGC-GUUCACGAUGUGACugaACa- -3'
miRNA:   3'- cGCCGaCAAGUGUUGCACUGua-UGcu -5'
15913 3' -49 NC_004065.1 + 48120 0.7 0.994525
Target:  5'- gGCGGCgGUgggaccUCGCGcACGUugccGACGUGCGGa -3'
miRNA:   3'- -CGCCGaCA------AGUGU-UGCA----CUGUAUGCU- -5'
15913 3' -49 NC_004065.1 + 193864 0.69 0.995955
Target:  5'- aGCGGCUGa-CACAGCGccgcugGACuaGCGAu -3'
miRNA:   3'- -CGCCGACaaGUGUUGCa-----CUGuaUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.