miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15913 5' -52.6 NC_004065.1 + 186934 0.65 0.996648
Target:  5'- cGGgucgCGGAUGCCcggacCGUccgaacgugcggucUGU-CGCGCCGa -3'
miRNA:   3'- -CCa---GCCUACGGa----GCA--------------ACAuGUGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 52486 0.66 0.994971
Target:  5'- cGGUgGGGUGUUgggCGcUGUugGCGCgCGg -3'
miRNA:   3'- -CCAgCCUACGGa--GCaACAugUGUG-GC- -5'
15913 5' -52.6 NC_004065.1 + 28331 0.66 0.994971
Target:  5'- --aCGGAcaggGCCUguccgCGUUGUGC-CGCCGc -3'
miRNA:   3'- ccaGCCUa---CGGA-----GCAACAUGuGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 69398 0.66 0.994199
Target:  5'- uGG-CGGAacagcUGCCgacggggCGccagGUGCGCGCCGa -3'
miRNA:   3'- -CCaGCCU-----ACGGa------GCaa--CAUGUGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 59969 0.66 0.993334
Target:  5'- aGGUUGGcgGCUUCGUcGgcCGagcaGCCGg -3'
miRNA:   3'- -CCAGCCuaCGGAGCAaCauGUg---UGGC- -5'
15913 5' -52.6 NC_004065.1 + 222517 0.67 0.991738
Target:  5'- aGGUCGGAUGCguugacgguaaaaccCUCGagccgGUugACAUCc -3'
miRNA:   3'- -CCAGCCUACG---------------GAGCaa---CAugUGUGGc -5'
15913 5' -52.6 NC_004065.1 + 137910 0.67 0.988794
Target:  5'- -uUCGGGcUGCuCUCGUUGUAguC-CCGg -3'
miRNA:   3'- ccAGCCU-ACG-GAGCAACAUguGuGGC- -5'
15913 5' -52.6 NC_004065.1 + 7222 0.67 0.98735
Target:  5'- -cUCGG--GCCUCGUcgUGUGCgACAUCGa -3'
miRNA:   3'- ccAGCCuaCGGAGCA--ACAUG-UGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 192223 0.68 0.984035
Target:  5'- --aCGGcaccaCCUCGUUGUACugGCUGg -3'
miRNA:   3'- ccaGCCuac--GGAGCAACAUGugUGGC- -5'
15913 5' -52.6 NC_004065.1 + 65362 0.68 0.98215
Target:  5'- cGGUCGGAUcGaCCUgGgcGacGCGCGCCGc -3'
miRNA:   3'- -CCAGCCUA-C-GGAgCaaCa-UGUGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 127393 0.68 0.980101
Target:  5'- aGGUCGcGAcGCCUuccgaCGUUGUGCAgGCg- -3'
miRNA:   3'- -CCAGC-CUaCGGA-----GCAACAUGUgUGgc -5'
15913 5' -52.6 NC_004065.1 + 29392 0.68 0.977882
Target:  5'- gGGUgGGAUgGUUUUGaUGUAgGCGCCGg -3'
miRNA:   3'- -CCAgCCUA-CGGAGCaACAUgUGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 169297 0.69 0.972637
Target:  5'- aGGUUGGGgaucuucGCCagcgCGUUGUaagucccGCGCGCCGu -3'
miRNA:   3'- -CCAGCCUa------CGGa---GCAACA-------UGUGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 18584 0.69 0.960615
Target:  5'- aGGagCGGAgggGCCUCGUUGguguuguCGuCACCGc -3'
miRNA:   3'- -CCa-GCCUa--CGGAGCAACau-----GU-GUGGC- -5'
15913 5' -52.6 NC_004065.1 + 58639 0.7 0.949181
Target:  5'- cGGUcucgCGGAUGauguCCUgGUUGUGCACGCa- -3'
miRNA:   3'- -CCA----GCCUAC----GGAgCAACAUGUGUGgc -5'
15913 5' -52.6 NC_004065.1 + 40150 0.72 0.908717
Target:  5'- --aCGGcgGCCUCGUUGU-C-CACCa -3'
miRNA:   3'- ccaGCCuaCGGAGCAACAuGuGUGGc -5'
15913 5' -52.6 NC_004065.1 + 170919 0.73 0.853096
Target:  5'- cGGUCGGucUGUCUCG-UGUccuucuuucgccgGCGCGCCGc -3'
miRNA:   3'- -CCAGCCu-ACGGAGCaACA-------------UGUGUGGC- -5'
15913 5' -52.6 NC_004065.1 + 21854 1.11 0.008737
Target:  5'- uGGUCGGAUGCCUCGUUGUACACACCGc -3'
miRNA:   3'- -CCAGCCUACGGAGCAACAUGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.