miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 3' -55.7 NC_004065.1 + 18330 1.08 0.005642
Target:  5'- uCCGAGGAGAUGGUAGCGGCCUCGAAAg -3'
miRNA:   3'- -GGCUCCUCUACCAUCGCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 43864 0.77 0.464115
Target:  5'- gCCGuGGAGuucGGUGGCGGCCUCc--- -3'
miRNA:   3'- -GGCuCCUCua-CCAUCGCCGGAGcuuu -5'
15917 3' -55.7 NC_004065.1 + 127536 0.74 0.618539
Target:  5'- -aGAGGAGAUGGUaguAGUGGCCgcguaGGAGg -3'
miRNA:   3'- ggCUCCUCUACCA---UCGCCGGag---CUUU- -5'
15917 3' -55.7 NC_004065.1 + 190758 0.73 0.638537
Target:  5'- uCUGAuGGGGAcGGUGGCGGCCUgGuAAAa -3'
miRNA:   3'- -GGCU-CCUCUaCCAUCGCCGGAgC-UUU- -5'
15917 3' -55.7 NC_004065.1 + 56022 0.73 0.678412
Target:  5'- aCGAGGAuGAccgGGUAcuCGGCCUCGGAGg -3'
miRNA:   3'- gGCUCCU-CUa--CCAUc-GCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 105240 0.73 0.68831
Target:  5'- aCGAGGAGAUGGUGGC-GCa--GAAGg -3'
miRNA:   3'- gGCUCCUCUACCAUCGcCGgagCUUU- -5'
15917 3' -55.7 NC_004065.1 + 136575 0.72 0.717704
Target:  5'- gCCGGGGAGcUGGUccuGCGGUC-CGggGa -3'
miRNA:   3'- -GGCUCCUCuACCAu--CGCCGGaGCuuU- -5'
15917 3' -55.7 NC_004065.1 + 217379 0.72 0.727374
Target:  5'- gCGAGGAGcgGGgauaggAGCGGCCUa---- -3'
miRNA:   3'- gGCUCCUCuaCCa-----UCGCCGGAgcuuu -5'
15917 3' -55.7 NC_004065.1 + 81323 0.72 0.727374
Target:  5'- aCCu-GGcGAUGGccGCGGCCUCGAAGu -3'
miRNA:   3'- -GGcuCCuCUACCauCGCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 127202 0.71 0.746469
Target:  5'- cUCGGGGAcGUGGUucgggagcGGCGGCCgCGAGGa -3'
miRNA:   3'- -GGCUCCUcUACCA--------UCGCCGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 53647 0.71 0.765181
Target:  5'- gCGAGcAGAUGGUGGCG-CCUCGu-- -3'
miRNA:   3'- gGCUCcUCUACCAUCGCcGGAGCuuu -5'
15917 3' -55.7 NC_004065.1 + 102598 0.71 0.778015
Target:  5'- aUCGAGGAGAUgugcuccucgucgacGGUGaCGGCCUgGGAGa -3'
miRNA:   3'- -GGCUCCUCUA---------------CCAUcGCCGGAgCUUU- -5'
15917 3' -55.7 NC_004065.1 + 152752 0.71 0.783442
Target:  5'- uUCG-GGGGGUGGUAGCGGUaaCGGu- -3'
miRNA:   3'- -GGCuCCUCUACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 62378 0.7 0.801185
Target:  5'- gCGGcGGGGGUGGUggcggcggggguGGCGGCCgCGGAu -3'
miRNA:   3'- gGCU-CCUCUACCA------------UCGCCGGaGCUUu -5'
15917 3' -55.7 NC_004065.1 + 154332 0.7 0.809841
Target:  5'- aCGcAGGAGGUGGgggcGCGGCCaaGAAu -3'
miRNA:   3'- gGC-UCCUCUACCau--CGCCGGagCUUu -5'
15917 3' -55.7 NC_004065.1 + 18580 0.7 0.809841
Target:  5'- uCCGAGGAGc-GG-AGgGGCCUCGuuGg -3'
miRNA:   3'- -GGCUCCUCuaCCaUCgCCGGAGCuuU- -5'
15917 3' -55.7 NC_004065.1 + 30129 0.7 0.826683
Target:  5'- cCUGGGGAGGgcgGGUGGCGGag-CGAc- -3'
miRNA:   3'- -GGCUCCUCUa--CCAUCGCCggaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 127473 0.7 0.834855
Target:  5'- cCCGGGGAGGUGGUcgGGC-GCggCGGGAg -3'
miRNA:   3'- -GGCUCCUCUACCA--UCGcCGgaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 17279 0.7 0.838075
Target:  5'- aCCGccGGAGGUGGUgucGGgugcggcggagacaaCGGCCUCGGAGc -3'
miRNA:   3'- -GGCu-CCUCUACCA---UC---------------GCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 174362 0.7 0.842851
Target:  5'- gCCgGAGGAGAuggUGGUAGUGGUgaCGGu- -3'
miRNA:   3'- -GG-CUCCUCU---ACCAUCGCCGgaGCUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.