miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 3' -55.7 NC_004065.1 + 38220 0.67 0.942667
Target:  5'- cCCGGGGGGGUGGgaucccucCGGCUugucguUCGAAc -3'
miRNA:   3'- -GGCUCCUCUACCauc-----GCCGG------AGCUUu -5'
15917 3' -55.7 NC_004065.1 + 74598 0.67 0.942667
Target:  5'- gCCGucGGuGgcGGUGGCGGCCgaguuccCGGAAc -3'
miRNA:   3'- -GGCu-CCuCuaCCAUCGCCGGa------GCUUU- -5'
15917 3' -55.7 NC_004065.1 + 185451 0.67 0.933304
Target:  5'- aCGAGGAGugaugaugaagGUGGUGGUGGUgcgggUCGGGAg -3'
miRNA:   3'- gGCUCCUC-----------UACCAUCGCCGg----AGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 50953 0.67 0.930317
Target:  5'- gCGAGGAGAugagggucacggucaUGGgcaucGGCGGucCCUCGAu- -3'
miRNA:   3'- gGCUCCUCU---------------ACCa----UCGCC--GGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 75643 0.67 0.92828
Target:  5'- gCCGGGGAGGaGGUGGaaguggaGGUCggCGAGg -3'
miRNA:   3'- -GGCUCCUCUaCCAUCg------CCGGa-GCUUu -5'
15917 3' -55.7 NC_004065.1 + 19903 0.68 0.919769
Target:  5'- gCCGAGGAaucgaagacgguagcGGUGGUGGCGGUggUUaCGAc- -3'
miRNA:   3'- -GGCUCCU---------------CUACCAUCGCCG--GA-GCUuu -5'
15917 3' -55.7 NC_004065.1 + 222481 0.68 0.911843
Target:  5'- aCGGGGAGGUcGG-AGCGGa-UCGGAAa -3'
miRNA:   3'- gGCUCCUCUA-CCaUCGCCggAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 217611 0.68 0.911843
Target:  5'- uUCGAGGAGAcGGUAGCuaCCguugaUCGAGAg -3'
miRNA:   3'- -GGCUCCUCUaCCAUCGccGG-----AGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 75780 0.68 0.90591
Target:  5'- aCG-GGAGucgaGGUcucacGGCGGCCUCGGc- -3'
miRNA:   3'- gGCuCCUCua--CCA-----UCGCCGGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 78270 0.68 0.90591
Target:  5'- cCCGAuucugcgugcGGuGGUcGUAGCGGCuCUCGAGGg -3'
miRNA:   3'- -GGCU----------CCuCUAcCAUCGCCG-GAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 130852 0.68 0.886778
Target:  5'- gCGAGGAGGugcagcagcagcUGGaGGCGGCCaCGGu- -3'
miRNA:   3'- gGCUCCUCU------------ACCaUCGCCGGaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 89550 0.68 0.886778
Target:  5'- cUCGGuGGAGAUcuugcGGUAGCGGCC-CGu-- -3'
miRNA:   3'- -GGCU-CCUCUA-----CCAUCGCCGGaGCuuu -5'
15917 3' -55.7 NC_004065.1 + 44535 0.68 0.886778
Target:  5'- aCCGGGGAcGGUGGcGGCGcuGCCUCc--- -3'
miRNA:   3'- -GGCUCCU-CUACCaUCGC--CGGAGcuuu -5'
15917 3' -55.7 NC_004065.1 + 54507 0.68 0.886778
Target:  5'- aCGAGGuGGUGGaGGCGGUUgaCGAGGa -3'
miRNA:   3'- gGCUCCuCUACCaUCGCCGGa-GCUUU- -5'
15917 3' -55.7 NC_004065.1 + 105485 0.68 0.886778
Target:  5'- gCCGAGGAGcuguuccaccUGGUGGCGcacguGCC-CGAGAa -3'
miRNA:   3'- -GGCUCCUCu---------ACCAUCGC-----CGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 135255 0.69 0.872944
Target:  5'- uCCGAGGAGAUGGaggaccGGCuGGCCa----- -3'
miRNA:   3'- -GGCUCCUCUACCa-----UCG-CCGGagcuuu -5'
15917 3' -55.7 NC_004065.1 + 109233 0.69 0.872944
Target:  5'- aCG-GGAGAcggcggcGGUAGCGGCgUCGGu- -3'
miRNA:   3'- gGCuCCUCUa------CCAUCGCCGgAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 170362 0.69 0.850664
Target:  5'- aCGAGGAcGA-GGUGGCGuGCUcCGAGAc -3'
miRNA:   3'- gGCUCCU-CUaCCAUCGC-CGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 174362 0.7 0.842851
Target:  5'- gCCgGAGGAGAuggUGGUAGUGGUgaCGGu- -3'
miRNA:   3'- -GG-CUCCUCU---ACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 225172 0.7 0.842851
Target:  5'- gCCGAGGGcggcGGUGGUGGUGGUuuucUUCGGu- -3'
miRNA:   3'- -GGCUCCU----CUACCAUCGCCG----GAGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.