miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 3' -55.7 NC_004065.1 + 17279 0.7 0.838075
Target:  5'- aCCGccGGAGGUGGUgucGGgugcggcggagacaaCGGCCUCGGAGc -3'
miRNA:   3'- -GGCu-CCUCUACCA---UC---------------GCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 18330 1.08 0.005642
Target:  5'- uCCGAGGAGAUGGUAGCGGCCUCGAAAg -3'
miRNA:   3'- -GGCUCCUCUACCAUCGCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 18580 0.7 0.809841
Target:  5'- uCCGAGGAGc-GG-AGgGGCCUCGuuGg -3'
miRNA:   3'- -GGCUCCUCuaCCaUCgCCGGAGCuuU- -5'
15917 3' -55.7 NC_004065.1 + 19903 0.68 0.919769
Target:  5'- gCCGAGGAaucgaagacgguagcGGUGGUGGCGGUggUUaCGAc- -3'
miRNA:   3'- -GGCUCCU---------------CUACCAUCGCCG--GA-GCUuu -5'
15917 3' -55.7 NC_004065.1 + 23488 0.66 0.948686
Target:  5'- aCCGAuaGGGGAcacguucaagccggGGUAGCG-CCUCGAu- -3'
miRNA:   3'- -GGCU--CCUCUa-------------CCAUCGCcGGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 28993 0.66 0.963517
Target:  5'- uCCGGcGGcGGUGGcGaggcgccgcgcgcacGCGGCCUCGAGu -3'
miRNA:   3'- -GGCU-CCuCUACCaU---------------CGCCGGAGCUUu -5'
15917 3' -55.7 NC_004065.1 + 30129 0.7 0.826683
Target:  5'- cCUGGGGAGGgcgGGUGGCGGag-CGAc- -3'
miRNA:   3'- -GGCUCCUCUa--CCAUCGCCggaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 36478 0.66 0.96545
Target:  5'- aCCGAGG-GAUGGaucgGGaUGGCCcggcgCGGAGa -3'
miRNA:   3'- -GGCUCCuCUACCa---UC-GCCGGa----GCUUU- -5'
15917 3' -55.7 NC_004065.1 + 38220 0.67 0.942667
Target:  5'- cCCGGGGGGGUGGgaucccucCGGCUugucguUCGAAc -3'
miRNA:   3'- -GGCUCCUCUACCauc-----GCCGG------AGCUUu -5'
15917 3' -55.7 NC_004065.1 + 38544 0.66 0.962187
Target:  5'- cCUGGGGGGAcacgcgugcgUGGUGGUgccgcaccucGGCgUCGAGGa -3'
miRNA:   3'- -GGCUCCUCU----------ACCAUCG----------CCGgAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 43864 0.77 0.464115
Target:  5'- gCCGuGGAGuucGGUGGCGGCCUCc--- -3'
miRNA:   3'- -GGCuCCUCua-CCAUCGCCGGAGcuuu -5'
15917 3' -55.7 NC_004065.1 + 44535 0.68 0.886778
Target:  5'- aCCGGGGAcGGUGGcGGCGcuGCCUCc--- -3'
miRNA:   3'- -GGCUCCU-CUACCaUCGC--CGGAGcuuu -5'
15917 3' -55.7 NC_004065.1 + 50953 0.67 0.930317
Target:  5'- gCGAGGAGAugagggucacggucaUGGgcaucGGCGGucCCUCGAu- -3'
miRNA:   3'- gGCUCCUCU---------------ACCa----UCGCC--GGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 53647 0.71 0.765181
Target:  5'- gCGAGcAGAUGGUGGCG-CCUCGu-- -3'
miRNA:   3'- gGCUCcUCUACCAUCGCcGGAGCuuu -5'
15917 3' -55.7 NC_004065.1 + 54507 0.68 0.886778
Target:  5'- aCGAGGuGGUGGaGGCGGUUgaCGAGGa -3'
miRNA:   3'- gGCUCCuCUACCaUCGCCGGa-GCUUU- -5'
15917 3' -55.7 NC_004065.1 + 55762 0.66 0.96545
Target:  5'- uCCGAGuGGAaGaUGGCGGUCUCGGc- -3'
miRNA:   3'- -GGCUCcUCUaCcAUCGCCGGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 56022 0.73 0.678412
Target:  5'- aCGAGGAuGAccgGGUAcuCGGCCUCGGAGg -3'
miRNA:   3'- gGCUCCU-CUa--CCAUc-GCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 59757 0.66 0.958716
Target:  5'- aCCGcguGGccGAUGGUGGCGGCggCGGc- -3'
miRNA:   3'- -GGCu--CCu-CUACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 62378 0.7 0.801185
Target:  5'- gCGGcGGGGGUGGUggcggcggggguGGCGGCCgCGGAu -3'
miRNA:   3'- gGCU-CCUCUACCA------------UCGCCGGaGCUUu -5'
15917 3' -55.7 NC_004065.1 + 68536 0.66 0.951131
Target:  5'- gCCGAGGAGgcGGcGGCGGaggugacggcguCC-CGAAGg -3'
miRNA:   3'- -GGCUCCUCuaCCaUCGCC------------GGaGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.