miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 3' -55.7 NC_004065.1 + 72499 0.66 0.962187
Target:  5'- aCCGGGGAGAaGGUGGaaCGGCaggUGGu- -3'
miRNA:   3'- -GGCUCCUCUaCCAUC--GCCGga-GCUuu -5'
15917 3' -55.7 NC_004065.1 + 74598 0.67 0.942667
Target:  5'- gCCGucGGuGgcGGUGGCGGCCgaguuccCGGAAc -3'
miRNA:   3'- -GGCu-CCuCuaCCAUCGCCGGa------GCUUU- -5'
15917 3' -55.7 NC_004065.1 + 75478 0.66 0.96545
Target:  5'- aCGAGGGcGAUGGcGGCGGCga-GGAu -3'
miRNA:   3'- gGCUCCU-CUACCaUCGCCGgagCUUu -5'
15917 3' -55.7 NC_004065.1 + 75643 0.67 0.92828
Target:  5'- gCCGGGGAGGaGGUGGaaguggaGGUCggCGAGg -3'
miRNA:   3'- -GGCUCCUCUaCCAUCg------CCGGa-GCUUu -5'
15917 3' -55.7 NC_004065.1 + 75780 0.68 0.90591
Target:  5'- aCG-GGAGucgaGGUcucacGGCGGCCUCGGc- -3'
miRNA:   3'- gGCuCCUCua--CCA-----UCGCCGGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 75887 0.66 0.962187
Target:  5'- gCGcAGGAGGgccUGGUAcuCGGCCUCGu-- -3'
miRNA:   3'- gGC-UCCUCU---ACCAUc-GCCGGAGCuuu -5'
15917 3' -55.7 NC_004065.1 + 78270 0.68 0.90591
Target:  5'- cCCGAuucugcgugcGGuGGUcGUAGCGGCuCUCGAGGg -3'
miRNA:   3'- -GGCU----------CCuCUAcCAUCGCCG-GAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 81323 0.72 0.727374
Target:  5'- aCCu-GGcGAUGGccGCGGCCUCGAAGu -3'
miRNA:   3'- -GGcuCCuCUACCauCGCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 88917 0.66 0.947011
Target:  5'- gCUGAcGGAGAcGaGcgAGCGGCCgUCGAAGa -3'
miRNA:   3'- -GGCU-CCUCUaC-Ca-UCGCCGG-AGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 89550 0.68 0.886778
Target:  5'- cUCGGuGGAGAUcuugcGGUAGCGGCC-CGu-- -3'
miRNA:   3'- -GGCU-CCUCUA-----CCAUCGCCGGaGCuuu -5'
15917 3' -55.7 NC_004065.1 + 96259 0.66 0.951131
Target:  5'- gUCGAGGAugcgGAUGGacggcggGGCGGCCagGGGc -3'
miRNA:   3'- -GGCUCCU----CUACCa------UCGCCGGagCUUu -5'
15917 3' -55.7 NC_004065.1 + 102598 0.71 0.778015
Target:  5'- aUCGAGGAGAUgugcuccucgucgacGGUGaCGGCCUgGGAGa -3'
miRNA:   3'- -GGCUCCUCUA---------------CCAUcGCCGGAgCUUU- -5'
15917 3' -55.7 NC_004065.1 + 105240 0.73 0.68831
Target:  5'- aCGAGGAGAUGGUGGC-GCa--GAAGg -3'
miRNA:   3'- gGCUCCUCUACCAUCGcCGgagCUUU- -5'
15917 3' -55.7 NC_004065.1 + 105485 0.68 0.886778
Target:  5'- gCCGAGGAGcuguuccaccUGGUGGCGcacguGCC-CGAGAa -3'
miRNA:   3'- -GGCUCCUCu---------ACCAUCGC-----CGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 109233 0.69 0.872944
Target:  5'- aCG-GGAGAcggcggcGGUAGCGGCgUCGGu- -3'
miRNA:   3'- gGCuCCUCUa------CCAUCGCCGgAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 115054 0.66 0.958357
Target:  5'- gCCGAGGGcaacggcgcgcgcGA-GGacGCGGCCUCGGu- -3'
miRNA:   3'- -GGCUCCU-------------CUaCCauCGCCGGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 115583 0.66 0.962187
Target:  5'- aCGGcGGuGGUGGUGGCGGCgg-GAGAu -3'
miRNA:   3'- gGCU-CCuCUACCAUCGCCGgagCUUU- -5'
15917 3' -55.7 NC_004065.1 + 119299 0.66 0.955032
Target:  5'- uCCGAGcAGGUcuucgggucgagGGUGGCGGCuCUCGc-- -3'
miRNA:   3'- -GGCUCcUCUA------------CCAUCGCCG-GAGCuuu -5'
15917 3' -55.7 NC_004065.1 + 127202 0.71 0.746469
Target:  5'- cUCGGGGAcGUGGUucgggagcGGCGGCCgCGAGGa -3'
miRNA:   3'- -GGCUCCUcUACCA--------UCGCCGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 127473 0.7 0.834855
Target:  5'- cCCGGGGAGGUGGUcgGGC-GCggCGGGAg -3'
miRNA:   3'- -GGCUCCUCUACCA--UCGcCGgaGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.