miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 3' -55.7 NC_004065.1 + 225172 0.7 0.842851
Target:  5'- gCCGAGGGcggcGGUGGUGGUGGUuuucUUCGGu- -3'
miRNA:   3'- -GGCUCCU----CUACCAUCGCCG----GAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 224043 0.66 0.962187
Target:  5'- cCCGAGGGccauGAcGGccGGUGGCCgCGAGAa -3'
miRNA:   3'- -GGCUCCU----CUaCCa-UCGCCGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 222481 0.68 0.911843
Target:  5'- aCGGGGAGGUcGG-AGCGGa-UCGGAAa -3'
miRNA:   3'- gGCUCCUCUA-CCaUCGCCggAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 217611 0.68 0.911843
Target:  5'- uUCGAGGAGAcGGUAGCuaCCguugaUCGAGAg -3'
miRNA:   3'- -GGCUCCUCUaCCAUCGccGG-----AGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 217379 0.72 0.727374
Target:  5'- gCGAGGAGcgGGgauaggAGCGGCCUa---- -3'
miRNA:   3'- gGCUCCUCuaCCa-----UCGCCGGAgcuuu -5'
15917 3' -55.7 NC_004065.1 + 205430 0.66 0.958716
Target:  5'- aCCGGcGGcGgcGGUGGCGGCgaCGAc- -3'
miRNA:   3'- -GGCU-CCuCuaCCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 204093 0.66 0.96545
Target:  5'- uCCGAGGAGGacgUGGUuucCGaGaCCUCGAu- -3'
miRNA:   3'- -GGCUCCUCU---ACCAuc-GC-C-GGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 190758 0.73 0.638537
Target:  5'- uCUGAuGGGGAcGGUGGCGGCCUgGuAAAa -3'
miRNA:   3'- -GGCU-CCUCUaCCAUCGCCGGAgC-UUU- -5'
15917 3' -55.7 NC_004065.1 + 185451 0.67 0.933304
Target:  5'- aCGAGGAGugaugaugaagGUGGUGGUGGUgcgggUCGGGAg -3'
miRNA:   3'- gGCUCCUC-----------UACCAUCGCCGg----AGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 174362 0.7 0.842851
Target:  5'- gCCgGAGGAGAuggUGGUAGUGGUgaCGGu- -3'
miRNA:   3'- -GG-CUCCUCU---ACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 170362 0.69 0.850664
Target:  5'- aCGAGGAcGA-GGUGGCGuGCUcCGAGAc -3'
miRNA:   3'- gGCUCCU-CUaCCAUCGC-CGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 154332 0.7 0.809841
Target:  5'- aCGcAGGAGGUGGgggcGCGGCCaaGAAu -3'
miRNA:   3'- gGC-UCCUCUACCau--CGCCGGagCUUu -5'
15917 3' -55.7 NC_004065.1 + 152752 0.71 0.783442
Target:  5'- uUCG-GGGGGUGGUAGCGGUaaCGGu- -3'
miRNA:   3'- -GGCuCCUCUACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 136575 0.72 0.717704
Target:  5'- gCCGGGGAGcUGGUccuGCGGUC-CGggGa -3'
miRNA:   3'- -GGCUCCUCuACCAu--CGCCGGaGCuuU- -5'
15917 3' -55.7 NC_004065.1 + 136409 0.7 0.842851
Target:  5'- gCCGGGGAGcUGGUccuGGgGGCC-CGGu- -3'
miRNA:   3'- -GGCUCCUCuACCA---UCgCCGGaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 136254 0.66 0.96545
Target:  5'- aCCG-GGAGcgGGgcGCuGGUCUgGGGAg -3'
miRNA:   3'- -GGCuCCUCuaCCauCG-CCGGAgCUUU- -5'
15917 3' -55.7 NC_004065.1 + 135255 0.69 0.872944
Target:  5'- uCCGAGGAGAUGGaggaccGGCuGGCCa----- -3'
miRNA:   3'- -GGCUCCUCUACCa-----UCG-CCGGagcuuu -5'
15917 3' -55.7 NC_004065.1 + 132154 0.66 0.951131
Target:  5'- gCCGAgccuGGAcGUGGUGGCGGCgauggCGGAc -3'
miRNA:   3'- -GGCU----CCUcUACCAUCGCCGga---GCUUu -5'
15917 3' -55.7 NC_004065.1 + 130852 0.68 0.886778
Target:  5'- gCGAGGAGGugcagcagcagcUGGaGGCGGCCaCGGu- -3'
miRNA:   3'- gGCUCCUCU------------ACCaUCGCCGGaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 127536 0.74 0.618539
Target:  5'- -aGAGGAGAUGGUaguAGUGGCCgcguaGGAGg -3'
miRNA:   3'- ggCUCCUCUACCA---UCGCCGGag---CUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.