miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 3' -55.7 NC_004065.1 + 50953 0.67 0.930317
Target:  5'- gCGAGGAGAugagggucacggucaUGGgcaucGGCGGucCCUCGAu- -3'
miRNA:   3'- gGCUCCUCU---------------ACCa----UCGCC--GGAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 109233 0.69 0.872944
Target:  5'- aCG-GGAGAcggcggcGGUAGCGGCgUCGGu- -3'
miRNA:   3'- gGCuCCUCUa------CCAUCGCCGgAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 89550 0.68 0.886778
Target:  5'- cUCGGuGGAGAUcuugcGGUAGCGGCC-CGu-- -3'
miRNA:   3'- -GGCU-CCUCUA-----CCAUCGCCGGaGCuuu -5'
15917 3' -55.7 NC_004065.1 + 44535 0.68 0.886778
Target:  5'- aCCGGGGAcGGUGGcGGCGcuGCCUCc--- -3'
miRNA:   3'- -GGCUCCU-CUACCaUCGC--CGGAGcuuu -5'
15917 3' -55.7 NC_004065.1 + 54507 0.68 0.886778
Target:  5'- aCGAGGuGGUGGaGGCGGUUgaCGAGGa -3'
miRNA:   3'- gGCUCCuCUACCaUCGCCGGa-GCUUU- -5'
15917 3' -55.7 NC_004065.1 + 217611 0.68 0.911843
Target:  5'- uUCGAGGAGAcGGUAGCuaCCguugaUCGAGAg -3'
miRNA:   3'- -GGCUCCUCUaCCAUCGccGG-----AGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 222481 0.68 0.911843
Target:  5'- aCGGGGAGGUcGG-AGCGGa-UCGGAAa -3'
miRNA:   3'- gGCUCCUCUA-CCaUCGCCggAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 19903 0.68 0.919769
Target:  5'- gCCGAGGAaucgaagacgguagcGGUGGUGGCGGUggUUaCGAc- -3'
miRNA:   3'- -GGCUCCU---------------CUACCAUCGCCG--GA-GCUuu -5'
15917 3' -55.7 NC_004065.1 + 75643 0.67 0.92828
Target:  5'- gCCGGGGAGGaGGUGGaaguggaGGUCggCGAGg -3'
miRNA:   3'- -GGCUCCUCUaCCAUCg------CCGGa-GCUUu -5'
15917 3' -55.7 NC_004065.1 + 135255 0.69 0.872944
Target:  5'- uCCGAGGAGAUGGaggaccGGCuGGCCa----- -3'
miRNA:   3'- -GGCUCCUCUACCa-----UCG-CCGGagcuuu -5'
15917 3' -55.7 NC_004065.1 + 225172 0.7 0.842851
Target:  5'- gCCGAGGGcggcGGUGGUGGUGGUuuucUUCGGu- -3'
miRNA:   3'- -GGCUCCU----CUACCAUCGCCG----GAGCUuu -5'
15917 3' -55.7 NC_004065.1 + 174362 0.7 0.842851
Target:  5'- gCCgGAGGAGAuggUGGUAGUGGUgaCGGu- -3'
miRNA:   3'- -GG-CUCCUCU---ACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 217379 0.72 0.727374
Target:  5'- gCGAGGAGcgGGgauaggAGCGGCCUa---- -3'
miRNA:   3'- gGCUCCUCuaCCa-----UCGCCGGAgcuuu -5'
15917 3' -55.7 NC_004065.1 + 81323 0.72 0.727374
Target:  5'- aCCu-GGcGAUGGccGCGGCCUCGAAGu -3'
miRNA:   3'- -GGcuCCuCUACCauCGCCGGAGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 127202 0.71 0.746469
Target:  5'- cUCGGGGAcGUGGUucgggagcGGCGGCCgCGAGGa -3'
miRNA:   3'- -GGCUCCUcUACCA--------UCGCCGGaGCUUU- -5'
15917 3' -55.7 NC_004065.1 + 152752 0.71 0.783442
Target:  5'- uUCG-GGGGGUGGUAGCGGUaaCGGu- -3'
miRNA:   3'- -GGCuCCUCUACCAUCGCCGgaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 62378 0.7 0.801185
Target:  5'- gCGGcGGGGGUGGUggcggcggggguGGCGGCCgCGGAu -3'
miRNA:   3'- gGCU-CCUCUACCA------------UCGCCGGaGCUUu -5'
15917 3' -55.7 NC_004065.1 + 18580 0.7 0.809841
Target:  5'- uCCGAGGAGc-GG-AGgGGCCUCGuuGg -3'
miRNA:   3'- -GGCUCCUCuaCCaUCgCCGGAGCuuU- -5'
15917 3' -55.7 NC_004065.1 + 30129 0.7 0.826683
Target:  5'- cCUGGGGAGGgcgGGUGGCGGag-CGAc- -3'
miRNA:   3'- -GGCUCCUCUa--CCAUCGCCggaGCUuu -5'
15917 3' -55.7 NC_004065.1 + 17279 0.7 0.838075
Target:  5'- aCCGccGGAGGUGGUgucGGgugcggcggagacaaCGGCCUCGGAGc -3'
miRNA:   3'- -GGCu-CCUCUACCA---UC---------------GCCGGAGCUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.