miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 63817 0.66 0.930868
Target:  5'- ---aCGAAAGAGaCCGUgaugGCUCUCCGg -3'
miRNA:   3'- ccgaGUUUUCUCcGGCGa---CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 67389 0.66 0.930868
Target:  5'- aGGCUgGGcgccGAGGCCaguaauguGcCUGuCUCCCCGg -3'
miRNA:   3'- -CCGAgUUuu--CUCCGG--------C-GAC-GAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 139879 0.66 0.930868
Target:  5'- cGGCggCAggacggacGAGGuGGCCGCgggGC-CUCCGg -3'
miRNA:   3'- -CCGa-GU--------UUUCuCCGGCGa--CGaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 119949 0.66 0.930868
Target:  5'- aGCaggCAGAGGAcGGCCGUgag-CCCCGa -3'
miRNA:   3'- cCGa--GUUUUCU-CCGGCGacgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 12920 0.66 0.930868
Target:  5'- gGGCUCcuGcuGGGuCUGCUGUUCgCCGc -3'
miRNA:   3'- -CCGAGuuUucUCC-GGCGACGAGgGGC- -5'
15917 5' -57.4 NC_004065.1 + 178510 0.66 0.930868
Target:  5'- aGGCUUcuugcuAGGGGCCuGCUGCUgCUg- -3'
miRNA:   3'- -CCGAGuuu---UCUCCGG-CGACGAgGGgc -5'
15917 5' -57.4 NC_004065.1 + 163357 0.66 0.925788
Target:  5'- gGGCUgu-GGGGGGCC-CggugGCUCUCCa -3'
miRNA:   3'- -CCGAguuUUCUCCGGcGa---CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 76664 0.66 0.925788
Target:  5'- cGGCUCGAAacGGAucgcgucgGcGCCGCcG-UCCCCGa -3'
miRNA:   3'- -CCGAGUUU--UCU--------C-CGGCGaCgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 227040 0.66 0.925788
Target:  5'- uGGUUCGucggcgccAGAGAGGUCGCU-UUCCCa- -3'
miRNA:   3'- -CCGAGU--------UUUCUCCGGCGAcGAGGGgc -5'
15917 5' -57.4 NC_004065.1 + 127713 0.66 0.925788
Target:  5'- uGUUUc--GGGGGCUGCUcucGCUCUCCGa -3'
miRNA:   3'- cCGAGuuuUCUCCGGCGA---CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 130142 0.66 0.925788
Target:  5'- cGGCgagaggaAGGAcGAGGCCGUcGCUauccgcgaCCCCGg -3'
miRNA:   3'- -CCGag-----UUUU-CUCCGGCGaCGA--------GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 32922 0.66 0.925788
Target:  5'- aGGCgacGAAGAcGGCCGgucgGCUCCCgCGc -3'
miRNA:   3'- -CCGaguUUUCU-CCGGCga--CGAGGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 143717 0.66 0.925788
Target:  5'- cGUgCAcAAGAGGCUccccuccgaGCUGCUgCCCCa -3'
miRNA:   3'- cCGaGUuUUCUCCGG---------CGACGA-GGGGc -5'
15917 5' -57.4 NC_004065.1 + 134213 0.66 0.924745
Target:  5'- cGGCUCcguuuuccccGGGGGCUGCgugaGCgCCCUGg -3'
miRNA:   3'- -CCGAGuuu-------UCUCCGGCGa---CGaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 94000 0.66 0.924221
Target:  5'- cGGCUUuuc-GGGGUcccgguuccggcuuCGUUGCUCCCUGc -3'
miRNA:   3'- -CCGAGuuuuCUCCG--------------GCGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 193824 0.66 0.920485
Target:  5'- cGGCUUuuauAGAcugauGGuuGCUGCgcgCCCCc -3'
miRNA:   3'- -CCGAGuuu-UCU-----CCggCGACGa--GGGGc -5'
15917 5' -57.4 NC_004065.1 + 119313 0.66 0.914959
Target:  5'- cGGgUCGAGGGuGGCgGCU-CUCgCCCu -3'
miRNA:   3'- -CCgAGUUUUCuCCGgCGAcGAG-GGGc -5'
15917 5' -57.4 NC_004065.1 + 172087 0.66 0.914959
Target:  5'- cGGUUCGAGcGGGGGacguagCGCgGCUCCuCCGc -3'
miRNA:   3'- -CCGAGUUU-UCUCCg-----GCGaCGAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 141089 0.66 0.909211
Target:  5'- uGCUCAAGAacgucuucGAcGGCCGCUcGCucgUCUCCGu -3'
miRNA:   3'- cCGAGUUUU--------CU-CCGGCGA-CG---AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 165508 0.66 0.909211
Target:  5'- uGUUCcccacGAAGGGGuuGCgUGCUCCuuGa -3'
miRNA:   3'- cCGAGu----UUUCUCCggCG-ACGAGGggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.