Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15917 | 5' | -57.4 | NC_004065.1 | + | 193824 | 0.66 | 0.920485 |
Target: 5'- cGGCUUuuauAGAcugauGGuuGCUGCgcgCCCCc -3' miRNA: 3'- -CCGAGuuu-UCU-----CCggCGACGa--GGGGc -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 163357 | 0.66 | 0.925788 |
Target: 5'- gGGCUgu-GGGGGGCC-CggugGCUCUCCa -3' miRNA: 3'- -CCGAguuUUCUCCGGcGa---CGAGGGGc -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 143717 | 0.66 | 0.925788 |
Target: 5'- cGUgCAcAAGAGGCUccccuccgaGCUGCUgCCCCa -3' miRNA: 3'- cCGaGUuUUCUCCGG---------CGACGA-GGGGc -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 139879 | 0.66 | 0.930868 |
Target: 5'- cGGCggCAggacggacGAGGuGGCCGCgggGC-CUCCGg -3' miRNA: 3'- -CCGa-GU--------UUUCuCCGGCGa--CGaGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 75066 | 0.66 | 0.903242 |
Target: 5'- uGCUC----GAGGCgGCUGCUCaugCCGc -3' miRNA: 3'- cCGAGuuuuCUCCGgCGACGAGg--GGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 117991 | 0.66 | 0.903242 |
Target: 5'- cGGC-CGAuuc-GGCCGCgguucggGCUCCUCGu -3' miRNA: 3'- -CCGaGUUuucuCCGGCGa------CGAGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 93608 | 0.66 | 0.908035 |
Target: 5'- cGGCUCAcc--GGGCCcccaggaccaGCUCCCCGg -3' miRNA: 3'- -CCGAGUuuucUCCGGcga-------CGAGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 165508 | 0.66 | 0.909211 |
Target: 5'- uGUUCcccacGAAGGGGuuGCgUGCUCCuuGa -3' miRNA: 3'- cCGAGu----UUUCUCCggCG-ACGAGGggC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 119313 | 0.66 | 0.914959 |
Target: 5'- cGGgUCGAGGGuGGCgGCU-CUCgCCCu -3' miRNA: 3'- -CCgAGUUUUCuCCGgCGAcGAG-GGGc -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 141089 | 0.66 | 0.909211 |
Target: 5'- uGCUCAAGAacgucuucGAcGGCCGCUcGCucgUCUCCGu -3' miRNA: 3'- cCGAGUUUU--------CU-CCGGCGA-CG---AGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 52877 | 0.66 | 0.903242 |
Target: 5'- cGCUCcuccGAucGAGGCCaGUUcCUCCCCa -3' miRNA: 3'- cCGAG----UUuuCUCCGG-CGAcGAGGGGc -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 12920 | 0.66 | 0.930868 |
Target: 5'- gGGCUCcuGcuGGGuCUGCUGUUCgCCGc -3' miRNA: 3'- -CCGAGuuUucUCC-GGCGACGAGgGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 94000 | 0.66 | 0.924221 |
Target: 5'- cGGCUUuuc-GGGGUcccgguuccggcuuCGUUGCUCCCUGc -3' miRNA: 3'- -CCGAGuuuuCUCCG--------------GCGACGAGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 134213 | 0.66 | 0.924745 |
Target: 5'- cGGCUCcguuuuccccGGGGGCUGCgugaGCgCCCUGg -3' miRNA: 3'- -CCGAGuuu-------UCUCCGGCGa---CGaGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 32922 | 0.66 | 0.925788 |
Target: 5'- aGGCgacGAAGAcGGCCGgucgGCUCCCgCGc -3' miRNA: 3'- -CCGaguUUUCU-CCGGCga--CGAGGG-GC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 130142 | 0.66 | 0.925788 |
Target: 5'- cGGCgagaggaAGGAcGAGGCCGUcGCUauccgcgaCCCCGg -3' miRNA: 3'- -CCGag-----UUUU-CUCCGGCGaCGA--------GGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 76664 | 0.66 | 0.925788 |
Target: 5'- cGGCUCGAAacGGAucgcgucgGcGCCGCcG-UCCCCGa -3' miRNA: 3'- -CCGAGUUU--UCU--------C-CGGCGaCgAGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 178510 | 0.66 | 0.930868 |
Target: 5'- aGGCUUcuugcuAGGGGCCuGCUGCUgCUg- -3' miRNA: 3'- -CCGAGuuu---UCUCCGG-CGACGAgGGgc -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 127713 | 0.66 | 0.925788 |
Target: 5'- uGUUUc--GGGGGCUGCUcucGCUCUCCGa -3' miRNA: 3'- cCGAGuuuUCUCCGGCGA---CGAGGGGC- -5' |
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15917 | 5' | -57.4 | NC_004065.1 | + | 227040 | 0.66 | 0.925788 |
Target: 5'- uGGUUCGucggcgccAGAGAGGUCGCU-UUCCCa- -3' miRNA: 3'- -CCGAGU--------UUUCUCCGGCGAcGAGGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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