miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 18364 1.1 0.002656
Target:  5'- aGGCUCAAAAGAGGCCGCUGCUCCCCGu -3'
miRNA:   3'- -CCGAGUUUUCUCCGGCGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 185163 0.77 0.348853
Target:  5'- uGCUCGAgcGAGAGGCgaCGCUGCUCcggCCCGu -3'
miRNA:   3'- cCGAGUU--UUCUCCG--GCGACGAG---GGGC- -5'
15917 5' -57.4 NC_004065.1 + 128713 0.77 0.371125
Target:  5'- cGGCUCcgcuucaGGGAGAGGCgGCUGg-CCCCGa -3'
miRNA:   3'- -CCGAG-------UUUUCUCCGgCGACgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 212722 0.76 0.412581
Target:  5'- cGGCUCc---GAGGCCGUUGuCUCCgCCGc -3'
miRNA:   3'- -CCGAGuuuuCUCCGGCGAC-GAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 17514 0.74 0.510898
Target:  5'- cGGCUCAGcGGAGGUCG-UGCggCCCGa -3'
miRNA:   3'- -CCGAGUUuUCUCCGGCgACGagGGGC- -5'
15917 5' -57.4 NC_004065.1 + 66356 0.74 0.520342
Target:  5'- uGCUUuguacuGAGGCCGCUGCUgCCuCCGc -3'
miRNA:   3'- cCGAGuuuu--CUCCGGCGACGA-GG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 68501 0.73 0.578253
Target:  5'- aGGCUCAGGuGAGGCgGCggacGCaUCuCCCGg -3'
miRNA:   3'- -CCGAGUUUuCUCCGgCGa---CG-AG-GGGC- -5'
15917 5' -57.4 NC_004065.1 + 26938 0.72 0.617648
Target:  5'- aGGCUCAAGgaccgcuccGGcGGCCGCgGCgggCUCCGg -3'
miRNA:   3'- -CCGAGUUU---------UCuCCGGCGaCGa--GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 78520 0.72 0.647325
Target:  5'- cGGcCUCAGAacaccgcugaGGAGcccguccgcguGCCGCUGCUCCUCu -3'
miRNA:   3'- -CC-GAGUUU----------UCUC-----------CGGCGACGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 77842 0.71 0.657204
Target:  5'- aGGCUCc--GGAcGCgGCguggGCUCCCCGg -3'
miRNA:   3'- -CCGAGuuuUCUcCGgCGa---CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 94452 0.71 0.686698
Target:  5'- uGUUCGAAGGAggugacGGCCGC--CUCCCCGu -3'
miRNA:   3'- cCGAGUUUUCU------CCGGCGacGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 175457 0.7 0.715812
Target:  5'- cGGCgaagCAcAGGAGGCUGCgaGCacgCCCCa -3'
miRNA:   3'- -CCGa---GUuUUCUCCGGCGa-CGa--GGGGc -5'
15917 5' -57.4 NC_004065.1 + 141431 0.7 0.715812
Target:  5'- aGCUCAuGGAG-GGCCGCgacgaggGCgacaUCCCCGa -3'
miRNA:   3'- cCGAGU-UUUCuCCGGCGa------CG----AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 139476 0.7 0.722527
Target:  5'- aGGUUCGAGGG-GGCCGUcggGCgggacgagaaguacUCCCCGc -3'
miRNA:   3'- -CCGAGUUUUCuCCGGCGa--CG--------------AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 169240 0.7 0.722527
Target:  5'- uGGCUCAuguucgcgaggcGGGAGGCCGCggcccugUGCggCCUCGa -3'
miRNA:   3'- -CCGAGUu-----------UUCUCCGGCG-------ACGa-GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 97594 0.7 0.744325
Target:  5'- cGGCgcaacacgUCGAAGGAGGCCGCcGCcgCUgCCGa -3'
miRNA:   3'- -CCG--------AGUUUUCUCCGGCGaCGa-GG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 162334 0.7 0.760129
Target:  5'- cGGCggaAGAAGAGauggagggcccgccGCCGCcgccgccGCUCCCCGa -3'
miRNA:   3'- -CCGag-UUUUCUC--------------CGGCGa------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 75596 0.69 0.777429
Target:  5'- cGGCg-GGGGGAGGCCGCUGggucugguccugaUCCCgCGa -3'
miRNA:   3'- -CCGagUUUUCUCCGGCGACg------------AGGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 167354 0.69 0.781017
Target:  5'- cGGCggCAGAcAGGGucGCCGCUGCcgUCUCCGc -3'
miRNA:   3'- -CCGa-GUUU-UCUC--CGGCGACG--AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 47944 0.69 0.781017
Target:  5'- uGUUCuuccucccgaggAAGAGAuuguGGCCGauCUGCUCCCCGa -3'
miRNA:   3'- cCGAG------------UUUUCU----CCGGC--GACGAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.