miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 93608 0.66 0.908035
Target:  5'- cGGCUCAcc--GGGCCcccaggaccaGCUCCCCGg -3'
miRNA:   3'- -CCGAGUuuucUCCGGcga-------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 75066 0.66 0.903242
Target:  5'- uGCUC----GAGGCgGCUGCUCaugCCGc -3'
miRNA:   3'- cCGAGuuuuCUCCGgCGACGAGg--GGC- -5'
15917 5' -57.4 NC_004065.1 + 52877 0.66 0.903242
Target:  5'- cGCUCcuccGAucGAGGCCaGUUcCUCCCCa -3'
miRNA:   3'- cCGAG----UUuuCUCCGG-CGAcGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 117991 0.66 0.903242
Target:  5'- cGGC-CGAuuc-GGCCGCgguucggGCUCCUCGu -3'
miRNA:   3'- -CCGaGUUuucuCCGGCGa------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 192731 0.67 0.897055
Target:  5'- gGGCUCuu--GAGGCCGCcgaaacuggcGCUCUUCu -3'
miRNA:   3'- -CCGAGuuuuCUCCGGCGa---------CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 157526 0.67 0.890653
Target:  5'- uGGCUUugauuAAAGGuguuuGGUcuCGCUGCUCUCCa -3'
miRNA:   3'- -CCGAG-----UUUUCu----CCG--GCGACGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 109524 0.67 0.890652
Target:  5'- cGGCgccaAGAGGGGGUCGaUGaaCCCCGg -3'
miRNA:   3'- -CCGag--UUUUCUCCGGCgACgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 51302 0.67 0.89
Target:  5'- -cCUCugcGAAGAGguaugccGCCGCUGC-CCCCa -3'
miRNA:   3'- ccGAGu--UUUCUC-------CGGCGACGaGGGGc -5'
15917 5' -57.4 NC_004065.1 + 151504 0.67 0.886044
Target:  5'- gGGCUCcucagcgguguucuGAGGCCGCUGCcggCCGg -3'
miRNA:   3'- -CCGAGuuuu----------CUCCGGCGACGaggGGC- -5'
15917 5' -57.4 NC_004065.1 + 121195 0.67 0.877214
Target:  5'- aGGCUCAcc-GAGGCCGUcagccUGUUgCCgCGg -3'
miRNA:   3'- -CCGAGUuuuCUCCGGCG-----ACGAgGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 41452 0.67 0.877214
Target:  5'- uGGCcguGGAGAGcGUC-CUGCUCUCCGg -3'
miRNA:   3'- -CCGaguUUUCUC-CGGcGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 30081 0.67 0.876521
Target:  5'- cGGCggugGAAGcGAGGCCagcgguagcgagaGCUGCagCCCCGg -3'
miRNA:   3'- -CCGag--UUUU-CUCCGG-------------CGACGa-GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 211690 0.67 0.870186
Target:  5'- cGCUUuc--GAGGCCGCUaccauCUCCUCGg -3'
miRNA:   3'- cCGAGuuuuCUCCGGCGAc----GAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 204423 0.67 0.870186
Target:  5'- aGGCcccaUCGAGAucGGCCuGCUGCUCagCCGc -3'
miRNA:   3'- -CCG----AGUUUUcuCCGG-CGACGAGg-GGC- -5'
15917 5' -57.4 NC_004065.1 + 126425 0.67 0.862958
Target:  5'- uGUUCGAgcGGGGCCGCa--UCCUCGg -3'
miRNA:   3'- cCGAGUUuuCUCCGGCGacgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 184921 0.68 0.855536
Target:  5'- uGGCUCGGGAGcGGCCGggagacgguCUGCagagCUCCa -3'
miRNA:   3'- -CCGAGUUUUCuCCGGC---------GACGa---GGGGc -5'
15917 5' -57.4 NC_004065.1 + 135767 0.68 0.840131
Target:  5'- uGGCUCGugaacggcaccgGAGGGGGCUGCauuauuaaggcGCUCUCCu -3'
miRNA:   3'- -CCGAGU------------UUUCUCCGGCGa----------CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 203604 0.68 0.840131
Target:  5'- uGCUCuc-GGAGGCCGCcGC-CgCCGu -3'
miRNA:   3'- cCGAGuuuUCUCCGGCGaCGaGgGGC- -5'
15917 5' -57.4 NC_004065.1 + 93993 0.68 0.815715
Target:  5'- aGCaccCAGAAGAGGCUGC-GgUCCUCGa -3'
miRNA:   3'- cCGa--GUUUUCUCCGGCGaCgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 158035 0.68 0.813193
Target:  5'- aGGCUCAccuccAGGGcaugcgucgccuccGGGCUGCccgGCUCCaCCGg -3'
miRNA:   3'- -CCGAGU-----UUUC--------------UCCGGCGa--CGAGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.