miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 1937 0.69 0.807256
Target:  5'- gGGCcacCGAAAGAGGuaGgUGCcCCCCGu -3'
miRNA:   3'- -CCGa--GUUUUCUCCggCgACGaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 12920 0.66 0.930868
Target:  5'- gGGCUCcuGcuGGGuCUGCUGUUCgCCGc -3'
miRNA:   3'- -CCGAGuuUucUCC-GGCGACGAGgGGC- -5'
15917 5' -57.4 NC_004065.1 + 17514 0.74 0.510898
Target:  5'- cGGCUCAGcGGAGGUCG-UGCggCCCGa -3'
miRNA:   3'- -CCGAGUUuUCUCCGGCgACGagGGGC- -5'
15917 5' -57.4 NC_004065.1 + 18364 1.1 0.002656
Target:  5'- aGGCUCAAAAGAGGCCGCUGCUCCCCGu -3'
miRNA:   3'- -CCGAGUUUUCUCCGGCGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 26894 0.69 0.789899
Target:  5'- cGGC-CGGuccAGAGGCCGCUcgaccgcacgccGgaCCCCGa -3'
miRNA:   3'- -CCGaGUUu--UCUCCGGCGA------------CgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 26938 0.72 0.617648
Target:  5'- aGGCUCAAGgaccgcuccGGcGGCCGCgGCgggCUCCGg -3'
miRNA:   3'- -CCGAGUUU---------UCuCCGGCGaCGa--GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 30081 0.67 0.876521
Target:  5'- cGGCggugGAAGcGAGGCCagcgguagcgagaGCUGCagCCCCGg -3'
miRNA:   3'- -CCGag--UUUU-CUCCGG-------------CGACGa-GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 32922 0.66 0.925788
Target:  5'- aGGCgacGAAGAcGGCCGgucgGCUCCCgCGc -3'
miRNA:   3'- -CCGaguUUUCU-CCGGCga--CGAGGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 41452 0.67 0.877214
Target:  5'- uGGCcguGGAGAGcGUC-CUGCUCUCCGg -3'
miRNA:   3'- -CCGaguUUUCUC-CGGcGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 47944 0.69 0.781017
Target:  5'- uGUUCuuccucccgaggAAGAGAuuguGGCCGauCUGCUCCCCGa -3'
miRNA:   3'- cCGAG------------UUUUCU----CCGGC--GACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 51302 0.67 0.89
Target:  5'- -cCUCugcGAAGAGguaugccGCCGCUGC-CCCCa -3'
miRNA:   3'- ccGAGu--UUUCUC-------CGGCGACGaGGGGc -5'
15917 5' -57.4 NC_004065.1 + 52877 0.66 0.903242
Target:  5'- cGCUCcuccGAucGAGGCCaGUUcCUCCCCa -3'
miRNA:   3'- cCGAG----UUuuCUCCGG-CGAcGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 63817 0.66 0.930868
Target:  5'- ---aCGAAAGAGaCCGUgaugGCUCUCCGg -3'
miRNA:   3'- ccgaGUUUUCUCcGGCGa---CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 66356 0.74 0.520342
Target:  5'- uGCUUuguacuGAGGCCGCUGCUgCCuCCGc -3'
miRNA:   3'- cCGAGuuuu--CUCCGGCGACGA-GG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 67389 0.66 0.930868
Target:  5'- aGGCUgGGcgccGAGGCCaguaauguGcCUGuCUCCCCGg -3'
miRNA:   3'- -CCGAgUUuu--CUCCGG--------C-GAC-GAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 68501 0.73 0.578253
Target:  5'- aGGCUCAGGuGAGGCgGCggacGCaUCuCCCGg -3'
miRNA:   3'- -CCGAGUUUuCUCCGgCGa---CG-AG-GGGC- -5'
15917 5' -57.4 NC_004065.1 + 75066 0.66 0.903242
Target:  5'- uGCUC----GAGGCgGCUGCUCaugCCGc -3'
miRNA:   3'- cCGAGuuuuCUCCGgCGACGAGg--GGC- -5'
15917 5' -57.4 NC_004065.1 + 75596 0.69 0.777429
Target:  5'- cGGCg-GGGGGAGGCCGCUGggucugguccugaUCCCgCGa -3'
miRNA:   3'- -CCGagUUUUCUCCGGCGACg------------AGGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 76664 0.66 0.925788
Target:  5'- cGGCUCGAAacGGAucgcgucgGcGCCGCcG-UCCCCGa -3'
miRNA:   3'- -CCGAGUUU--UCU--------C-CGGCGaCgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 77842 0.71 0.657204
Target:  5'- aGGCUCc--GGAcGCgGCguggGCUCCCCGg -3'
miRNA:   3'- -CCGAGuuuUCUcCGgCGa---CGAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.