miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 78520 0.72 0.647325
Target:  5'- cGGcCUCAGAacaccgcugaGGAGcccguccgcguGCCGCUGCUCCUCu -3'
miRNA:   3'- -CC-GAGUUU----------UCUC-----------CGGCGACGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 93608 0.66 0.908035
Target:  5'- cGGCUCAcc--GGGCCcccaggaccaGCUCCCCGg -3'
miRNA:   3'- -CCGAGUuuucUCCGGcga-------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 93993 0.68 0.815715
Target:  5'- aGCaccCAGAAGAGGCUGC-GgUCCUCGa -3'
miRNA:   3'- cCGa--GUUUUCUCCGGCGaCgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 94000 0.66 0.924221
Target:  5'- cGGCUUuuc-GGGGUcccgguuccggcuuCGUUGCUCCCUGc -3'
miRNA:   3'- -CCGAGuuuuCUCCG--------------GCGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 94452 0.71 0.686698
Target:  5'- uGUUCGAAGGAggugacGGCCGC--CUCCCCGu -3'
miRNA:   3'- cCGAGUUUUCU------CCGGCGacGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 97594 0.7 0.744325
Target:  5'- cGGCgcaacacgUCGAAGGAGGCCGCcGCcgCUgCCGa -3'
miRNA:   3'- -CCG--------AGUUUUCUCCGGCGaCGa-GG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 109524 0.67 0.890652
Target:  5'- cGGCgccaAGAGGGGGUCGaUGaaCCCCGg -3'
miRNA:   3'- -CCGag--UUUUCUCCGGCgACgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 117991 0.66 0.903242
Target:  5'- cGGC-CGAuuc-GGCCGCgguucggGCUCCUCGu -3'
miRNA:   3'- -CCGaGUUuucuCCGGCGa------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 119313 0.66 0.914959
Target:  5'- cGGgUCGAGGGuGGCgGCU-CUCgCCCu -3'
miRNA:   3'- -CCgAGUUUUCuCCGgCGAcGAG-GGGc -5'
15917 5' -57.4 NC_004065.1 + 119949 0.66 0.930868
Target:  5'- aGCaggCAGAGGAcGGCCGUgag-CCCCGa -3'
miRNA:   3'- cCGa--GUUUUCU-CCGGCGacgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 121195 0.67 0.877214
Target:  5'- aGGCUCAcc-GAGGCCGUcagccUGUUgCCgCGg -3'
miRNA:   3'- -CCGAGUuuuCUCCGGCG-----ACGAgGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 122241 0.69 0.798648
Target:  5'- cGGgUCGuuccuGucGCCGCUGCUgCCCGc -3'
miRNA:   3'- -CCgAGUuuu--CucCGGCGACGAgGGGC- -5'
15917 5' -57.4 NC_004065.1 + 126425 0.67 0.862958
Target:  5'- uGUUCGAgcGGGGCCGCa--UCCUCGg -3'
miRNA:   3'- cCGAGUUuuCUCCGGCGacgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 127713 0.66 0.925788
Target:  5'- uGUUUc--GGGGGCUGCUcucGCUCUCCGa -3'
miRNA:   3'- cCGAGuuuUCUCCGGCGA---CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 128713 0.77 0.371125
Target:  5'- cGGCUCcgcuucaGGGAGAGGCgGCUGg-CCCCGa -3'
miRNA:   3'- -CCGAG-------UUUUCUCCGgCGACgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 130142 0.66 0.925788
Target:  5'- cGGCgagaggaAGGAcGAGGCCGUcGCUauccgcgaCCCCGg -3'
miRNA:   3'- -CCGag-----UUUU-CUCCGGCGaCGA--------GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 134213 0.66 0.924745
Target:  5'- cGGCUCcguuuuccccGGGGGCUGCgugaGCgCCCUGg -3'
miRNA:   3'- -CCGAGuuu-------UCUCCGGCGa---CGaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 135767 0.68 0.840131
Target:  5'- uGGCUCGugaacggcaccgGAGGGGGCUGCauuauuaaggcGCUCUCCu -3'
miRNA:   3'- -CCGAGU------------UUUCUCCGGCGa----------CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 139476 0.7 0.722527
Target:  5'- aGGUUCGAGGG-GGCCGUcggGCgggacgagaaguacUCCCCGc -3'
miRNA:   3'- -CCGAGUUUUCuCCGGCGa--CG--------------AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 139879 0.66 0.930868
Target:  5'- cGGCggCAggacggacGAGGuGGCCGCgggGC-CUCCGg -3'
miRNA:   3'- -CCGa-GU--------UUUCuCCGGCGa--CGaGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.