miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 227040 0.66 0.925788
Target:  5'- uGGUUCGucggcgccAGAGAGGUCGCU-UUCCCa- -3'
miRNA:   3'- -CCGAGU--------UUUCUCCGGCGAcGAGGGgc -5'
15917 5' -57.4 NC_004065.1 + 212722 0.76 0.412581
Target:  5'- cGGCUCc---GAGGCCGUUGuCUCCgCCGc -3'
miRNA:   3'- -CCGAGuuuuCUCCGGCGAC-GAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 211690 0.67 0.870186
Target:  5'- cGCUUuc--GAGGCCGCUaccauCUCCUCGg -3'
miRNA:   3'- cCGAGuuuuCUCCGGCGAc----GAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 204423 0.67 0.870186
Target:  5'- aGGCcccaUCGAGAucGGCCuGCUGCUCagCCGc -3'
miRNA:   3'- -CCG----AGUUUUcuCCGG-CGACGAGg-GGC- -5'
15917 5' -57.4 NC_004065.1 + 203604 0.68 0.840131
Target:  5'- uGCUCuc-GGAGGCCGCcGC-CgCCGu -3'
miRNA:   3'- cCGAGuuuUCUCCGGCGaCGaGgGGC- -5'
15917 5' -57.4 NC_004065.1 + 198191 0.69 0.789899
Target:  5'- -aCUCAGGggaauAGAGGUCGC-GCUCCCUu -3'
miRNA:   3'- ccGAGUUU-----UCUCCGGCGaCGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 193824 0.66 0.920485
Target:  5'- cGGCUUuuauAGAcugauGGuuGCUGCgcgCCCCc -3'
miRNA:   3'- -CCGAGuuu-UCU-----CCggCGACGa--GGGGc -5'
15917 5' -57.4 NC_004065.1 + 192731 0.67 0.897055
Target:  5'- gGGCUCuu--GAGGCCGCcgaaacuggcGCUCUUCu -3'
miRNA:   3'- -CCGAGuuuuCUCCGGCGa---------CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 185163 0.77 0.348853
Target:  5'- uGCUCGAgcGAGAGGCgaCGCUGCUCcggCCCGu -3'
miRNA:   3'- cCGAGUU--UUCUCCG--GCGACGAG---GGGC- -5'
15917 5' -57.4 NC_004065.1 + 184921 0.68 0.855536
Target:  5'- uGGCUCGGGAGcGGCCGggagacgguCUGCagagCUCCa -3'
miRNA:   3'- -CCGAGUUUUCuCCGGC---------GACGa---GGGGc -5'
15917 5' -57.4 NC_004065.1 + 178510 0.66 0.930868
Target:  5'- aGGCUUcuugcuAGGGGCCuGCUGCUgCUg- -3'
miRNA:   3'- -CCGAGuuu---UCUCCGG-CGACGAgGGgc -5'
15917 5' -57.4 NC_004065.1 + 175457 0.7 0.715812
Target:  5'- cGGCgaagCAcAGGAGGCUGCgaGCacgCCCCa -3'
miRNA:   3'- -CCGa---GUuUUCUCCGGCGa-CGa--GGGGc -5'
15917 5' -57.4 NC_004065.1 + 172087 0.66 0.914959
Target:  5'- cGGUUCGAGcGGGGGacguagCGCgGCUCCuCCGc -3'
miRNA:   3'- -CCGAGUUU-UCUCCg-----GCGaCGAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 169240 0.7 0.722527
Target:  5'- uGGCUCAuguucgcgaggcGGGAGGCCGCggcccugUGCggCCUCGa -3'
miRNA:   3'- -CCGAGUu-----------UUCUCCGGCG-------ACGa-GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 167354 0.69 0.781017
Target:  5'- cGGCggCAGAcAGGGucGCCGCUGCcgUCUCCGc -3'
miRNA:   3'- -CCGa-GUUU-UCUC--CGGCGACG--AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 165508 0.66 0.909211
Target:  5'- uGUUCcccacGAAGGGGuuGCgUGCUCCuuGa -3'
miRNA:   3'- cCGAGu----UUUCUCCggCG-ACGAGGggC- -5'
15917 5' -57.4 NC_004065.1 + 163357 0.66 0.925788
Target:  5'- gGGCUgu-GGGGGGCC-CggugGCUCUCCa -3'
miRNA:   3'- -CCGAguuUUCUCCGGcGa---CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 162334 0.7 0.760129
Target:  5'- cGGCggaAGAAGAGauggagggcccgccGCCGCcgccgccGCUCCCCGa -3'
miRNA:   3'- -CCGag-UUUUCUC--------------CGGCGa------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 158035 0.68 0.813193
Target:  5'- aGGCUCAccuccAGGGcaugcgucgccuccGGGCUGCccgGCUCCaCCGg -3'
miRNA:   3'- -CCGAGU-----UUUC--------------UCCGGCGa--CGAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 157526 0.67 0.890653
Target:  5'- uGGCUUugauuAAAGGuguuuGGUcuCGCUGCUCUCCa -3'
miRNA:   3'- -CCGAG-----UUUUCu----CCG--GCGACGAGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.