miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 172087 0.66 0.914959
Target:  5'- cGGUUCGAGcGGGGGacguagCGCgGCUCCuCCGc -3'
miRNA:   3'- -CCGAGUUU-UCUCCg-----GCGaCGAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 30081 0.67 0.876521
Target:  5'- cGGCggugGAAGcGAGGCCagcgguagcgagaGCUGCagCCCCGg -3'
miRNA:   3'- -CCGag--UUUU-CUCCGG-------------CGACGa-GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 121195 0.67 0.877214
Target:  5'- aGGCUCAcc-GAGGCCGUcagccUGUUgCCgCGg -3'
miRNA:   3'- -CCGAGUuuuCUCCGGCG-----ACGAgGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 157526 0.67 0.890653
Target:  5'- uGGCUUugauuAAAGGuguuuGGUcuCGCUGCUCUCCa -3'
miRNA:   3'- -CCGAG-----UUUUCu----CCG--GCGACGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 75066 0.66 0.903242
Target:  5'- uGCUC----GAGGCgGCUGCUCaugCCGc -3'
miRNA:   3'- cCGAGuuuuCUCCGgCGACGAGg--GGC- -5'
15917 5' -57.4 NC_004065.1 + 117991 0.66 0.903242
Target:  5'- cGGC-CGAuuc-GGCCGCgguucggGCUCCUCGu -3'
miRNA:   3'- -CCGaGUUuucuCCGGCGa------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 93608 0.66 0.908035
Target:  5'- cGGCUCAcc--GGGCCcccaggaccaGCUCCCCGg -3'
miRNA:   3'- -CCGAGUuuucUCCGGcga-------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 165508 0.66 0.909211
Target:  5'- uGUUCcccacGAAGGGGuuGCgUGCUCCuuGa -3'
miRNA:   3'- cCGAGu----UUUCUCCggCG-ACGAGGggC- -5'
15917 5' -57.4 NC_004065.1 + 119313 0.66 0.914959
Target:  5'- cGGgUCGAGGGuGGCgGCU-CUCgCCCu -3'
miRNA:   3'- -CCgAGUUUUCuCCGgCGAcGAG-GGGc -5'
15917 5' -57.4 NC_004065.1 + 211690 0.67 0.870186
Target:  5'- cGCUUuc--GAGGCCGCUaccauCUCCUCGg -3'
miRNA:   3'- cCGAGuuuuCUCCGGCGAc----GAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 184921 0.68 0.855536
Target:  5'- uGGCUCGGGAGcGGCCGggagacgguCUGCagagCUCCa -3'
miRNA:   3'- -CCGAGUUUUCuCCGGC---------GACGa---GGGGc -5'
15917 5' -57.4 NC_004065.1 + 135767 0.68 0.840131
Target:  5'- uGGCUCGugaacggcaccgGAGGGGGCUGCauuauuaaggcGCUCUCCu -3'
miRNA:   3'- -CCGAGU------------UUUCUCCGGCGa----------CGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 26938 0.72 0.617648
Target:  5'- aGGCUCAAGgaccgcuccGGcGGCCGCgGCgggCUCCGg -3'
miRNA:   3'- -CCGAGUUU---------UCuCCGGCGaCGa--GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 78520 0.72 0.647325
Target:  5'- cGGcCUCAGAacaccgcugaGGAGcccguccgcguGCCGCUGCUCCUCu -3'
miRNA:   3'- -CC-GAGUUU----------UCUC-----------CGGCGACGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 175457 0.7 0.715812
Target:  5'- cGGCgaagCAcAGGAGGCUGCgaGCacgCCCCa -3'
miRNA:   3'- -CCGa---GUuUUCUCCGGCGa-CGa--GGGGc -5'
15917 5' -57.4 NC_004065.1 + 97594 0.7 0.744325
Target:  5'- cGGCgcaacacgUCGAAGGAGGCCGCcGCcgCUgCCGa -3'
miRNA:   3'- -CCG--------AGUUUUCUCCGGCGaCGa-GG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 75596 0.69 0.777429
Target:  5'- cGGCg-GGGGGAGGCCGCUGggucugguccugaUCCCgCGa -3'
miRNA:   3'- -CCGagUUUUCUCCGGCGACg------------AGGG-GC- -5'
15917 5' -57.4 NC_004065.1 + 47944 0.69 0.781017
Target:  5'- uGUUCuuccucccgaggAAGAGAuuguGGCCGauCUGCUCCCCGa -3'
miRNA:   3'- cCGAG------------UUUUCU----CCGGC--GACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 26894 0.69 0.789899
Target:  5'- cGGC-CGGuccAGAGGCCGCUcgaccgcacgccGgaCCCCGa -3'
miRNA:   3'- -CCGaGUUu--UCUCCGGCGA------------CgaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 122241 0.69 0.798648
Target:  5'- cGGgUCGuuccuGucGCCGCUGCUgCCCGc -3'
miRNA:   3'- -CCgAGUuuu--CucCGGCGACGAgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.