miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15917 5' -57.4 NC_004065.1 + 18364 1.1 0.002656
Target:  5'- aGGCUCAAAAGAGGCCGCUGCUCCCCGu -3'
miRNA:   3'- -CCGAGUUUUCUCCGGCGACGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 203604 0.68 0.840131
Target:  5'- uGCUCuc-GGAGGCCGCcGC-CgCCGu -3'
miRNA:   3'- cCGAGuuuUCUCCGGCGaCGaGgGGC- -5'
15917 5' -57.4 NC_004065.1 + 204423 0.67 0.870186
Target:  5'- aGGCcccaUCGAGAucGGCCuGCUGCUCagCCGc -3'
miRNA:   3'- -CCG----AGUUUUcuCCGG-CGACGAGg-GGC- -5'
15917 5' -57.4 NC_004065.1 + 139879 0.66 0.930868
Target:  5'- cGGCggCAggacggacGAGGuGGCCGCgggGC-CUCCGg -3'
miRNA:   3'- -CCGa-GU--------UUUCuCCGGCGa--CGaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 66356 0.74 0.520342
Target:  5'- uGCUUuguacuGAGGCCGCUGCUgCCuCCGc -3'
miRNA:   3'- cCGAGuuuu--CUCCGGCGACGA-GG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 68501 0.73 0.578253
Target:  5'- aGGCUCAGGuGAGGCgGCggacGCaUCuCCCGg -3'
miRNA:   3'- -CCGAGUUUuCUCCGgCGa---CG-AG-GGGC- -5'
15917 5' -57.4 NC_004065.1 + 94452 0.71 0.686698
Target:  5'- uGUUCGAAGGAggugacGGCCGC--CUCCCCGu -3'
miRNA:   3'- cCGAGUUUUCU------CCGGCGacGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 141431 0.7 0.715812
Target:  5'- aGCUCAuGGAG-GGCCGCgacgaggGCgacaUCCCCGa -3'
miRNA:   3'- cCGAGU-UUUCuCCGGCGa------CG----AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 162334 0.7 0.760129
Target:  5'- cGGCggaAGAAGAGauggagggcccgccGCCGCcgccgccGCUCCCCGa -3'
miRNA:   3'- -CCGag-UUUUCUC--------------CGGCGa------CGAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 93993 0.68 0.815715
Target:  5'- aGCaccCAGAAGAGGCUGC-GgUCCUCGa -3'
miRNA:   3'- cCGa--GUUUUCUCCGGCGaCgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 198191 0.69 0.789899
Target:  5'- -aCUCAGGggaauAGAGGUCGC-GCUCCCUu -3'
miRNA:   3'- ccGAGUUU-----UCUCCGGCGaCGAGGGGc -5'
15917 5' -57.4 NC_004065.1 + 169240 0.7 0.722527
Target:  5'- uGGCUCAuguucgcgaggcGGGAGGCCGCggcccugUGCggCCUCGa -3'
miRNA:   3'- -CCGAGUu-----------UUCUCCGGCG-------ACGa-GGGGC- -5'
15917 5' -57.4 NC_004065.1 + 185163 0.77 0.348853
Target:  5'- uGCUCGAgcGAGAGGCgaCGCUGCUCcggCCCGu -3'
miRNA:   3'- cCGAGUU--UUCUCCG--GCGACGAG---GGGC- -5'
15917 5' -57.4 NC_004065.1 + 1937 0.69 0.807256
Target:  5'- gGGCcacCGAAAGAGGuaGgUGCcCCCCGu -3'
miRNA:   3'- -CCGa--GUUUUCUCCggCgACGaGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 212722 0.76 0.412581
Target:  5'- cGGCUCc---GAGGCCGUUGuCUCCgCCGc -3'
miRNA:   3'- -CCGAGuuuuCUCCGGCGAC-GAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 139476 0.7 0.722527
Target:  5'- aGGUUCGAGGG-GGCCGUcggGCgggacgagaaguacUCCCCGc -3'
miRNA:   3'- -CCGAGUUUUCuCCGGCGa--CG--------------AGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 158035 0.68 0.813193
Target:  5'- aGGCUCAccuccAGGGcaugcgucgccuccGGGCUGCccgGCUCCaCCGg -3'
miRNA:   3'- -CCGAGU-----UUUC--------------UCCGGCGa--CGAGG-GGC- -5'
15917 5' -57.4 NC_004065.1 + 126425 0.67 0.862958
Target:  5'- uGUUCGAgcGGGGCCGCa--UCCUCGg -3'
miRNA:   3'- cCGAGUUuuCUCCGGCGacgAGGGGC- -5'
15917 5' -57.4 NC_004065.1 + 17514 0.74 0.510898
Target:  5'- cGGCUCAGcGGAGGUCG-UGCggCCCGa -3'
miRNA:   3'- -CCGAGUUuUCUCCGGCgACGagGGGC- -5'
15917 5' -57.4 NC_004065.1 + 77842 0.71 0.657204
Target:  5'- aGGCUCc--GGAcGCgGCguggGCUCCCCGg -3'
miRNA:   3'- -CCGAGuuuUCUcCGgCGa---CGAGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.