miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1592 3' -56.7 NC_001347.2 + 192978 0.65 0.965912
Target:  5'- cCCCGGCGUUCagucgCGGCugagcguguggaggACgGGguggaGCg -3'
miRNA:   3'- -GGGCCGCAAGa----GCCG--------------UGgCCaaug-CG- -5'
1592 3' -56.7 NC_001347.2 + 19754 0.66 0.963734
Target:  5'- gCUGGUGUUg-CcGCACCGGUUGgaGCa -3'
miRNA:   3'- gGGCCGCAAgaGcCGUGGCCAAUg-CG- -5'
1592 3' -56.7 NC_001347.2 + 39386 0.66 0.963734
Target:  5'- gCCCGGCGUcgUCGuaGCCGcagcacuCGCa -3'
miRNA:   3'- -GGGCCGCAagAGCcgUGGCcaau---GCG- -5'
1592 3' -56.7 NC_001347.2 + 188825 0.66 0.963734
Target:  5'- aCCGaCGUUgacgUUCGGCGCCGGaguuaACGUu -3'
miRNA:   3'- gGGCcGCAA----GAGCCGUGGCCaa---UGCG- -5'
1592 3' -56.7 NC_001347.2 + 206691 0.66 0.960456
Target:  5'- uCUCGGCGggccUCUgGGgGCCGcacGgaGCGCg -3'
miRNA:   3'- -GGGCCGCa---AGAgCCgUGGC---CaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 188143 0.66 0.95698
Target:  5'- gCCCaugGUUCUCuGGCACCGGc--CGCc -3'
miRNA:   3'- -GGGccgCAAGAG-CCGUGGCCaauGCG- -5'
1592 3' -56.7 NC_001347.2 + 110445 0.66 0.95698
Target:  5'- -aCGGU---CUCGGUACUGGccuUUGCGCu -3'
miRNA:   3'- ggGCCGcaaGAGCCGUGGCC---AAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 126630 0.66 0.95698
Target:  5'- aCCUGGCcuaccgCaCGGCGCUGGcacGCGCg -3'
miRNA:   3'- -GGGCCGcaa---GaGCCGUGGCCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 31126 0.66 0.95698
Target:  5'- gCCGGCGUcca-GGCugccCUGGUUGcCGCu -3'
miRNA:   3'- gGGCCGCAagagCCGu---GGCCAAU-GCG- -5'
1592 3' -56.7 NC_001347.2 + 77874 0.66 0.953301
Target:  5'- gCCGaGCGc-CUgGGCGCCG--UGCGCg -3'
miRNA:   3'- gGGC-CGCaaGAgCCGUGGCcaAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 148611 0.66 0.953301
Target:  5'- aCCGGCGgug-CGGuCGCgGGUggccgGCGUc -3'
miRNA:   3'- gGGCCGCaagaGCC-GUGgCCAa----UGCG- -5'
1592 3' -56.7 NC_001347.2 + 194569 0.66 0.953301
Target:  5'- aCCGGCGcUUCUCGugccuGCGCCaGGcuggcCGCu -3'
miRNA:   3'- gGGCCGC-AAGAGC-----CGUGG-CCaau--GCG- -5'
1592 3' -56.7 NC_001347.2 + 197557 0.66 0.949415
Target:  5'- gCCGGCGUgg-CGGCcgaCGGcaGCGUg -3'
miRNA:   3'- gGGCCGCAagaGCCGug-GCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 12800 0.66 0.949415
Target:  5'- gCCGGCGUUUUCacuaCGCCGuGgacgACGCc -3'
miRNA:   3'- gGGCCGCAAGAGcc--GUGGC-Caa--UGCG- -5'
1592 3' -56.7 NC_001347.2 + 24657 0.67 0.94532
Target:  5'- uCCUGGCGcacaUCcCGGCGCUaGGUgucACGUg -3'
miRNA:   3'- -GGGCCGCa---AGaGCCGUGG-CCAa--UGCG- -5'
1592 3' -56.7 NC_001347.2 + 44030 0.67 0.94532
Target:  5'- aCgCGGUGgcgaCGGCAgCGGUggugGCGCu -3'
miRNA:   3'- -GgGCCGCaagaGCCGUgGCCAa---UGCG- -5'
1592 3' -56.7 NC_001347.2 + 50000 0.67 0.94532
Target:  5'- aCCCaa---UCUUGGUAUUGGUUACGCa -3'
miRNA:   3'- -GGGccgcaAGAGCCGUGGCCAAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 81481 0.67 0.94532
Target:  5'- -gUGGCGUcgucgCUCGGCgggugcgcaccGCCGGUgcUGCu -3'
miRNA:   3'- ggGCCGCAa----GAGCCG-----------UGGCCAauGCG- -5'
1592 3' -56.7 NC_001347.2 + 184394 0.67 0.944899
Target:  5'- aCgGGCGUugcggggcuUCUuggacucgugaagCGGCGCCGGgu-CGCu -3'
miRNA:   3'- gGgCCGCA---------AGA-------------GCCGUGGCCaauGCG- -5'
1592 3' -56.7 NC_001347.2 + 2362 0.67 0.941013
Target:  5'- gCUgGGCGcgCU-GGCGCUGGg-ACGCg -3'
miRNA:   3'- -GGgCCGCaaGAgCCGUGGCCaaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.