Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1592 | 3' | -56.7 | NC_001347.2 | + | 8622 | 0.7 | 0.835686 |
Target: 5'- gCUGGCGUUCcCGuaGCgGGU-GCGCa -3' miRNA: 3'- gGGCCGCAAGaGCcgUGgCCAaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 14053 | 0.7 | 0.811433 |
Target: 5'- gCCGGCuGUUUcUGcGCACCGGUccgaACGCu -3' miRNA: 3'- gGGCCG-CAAGaGC-CGUGGCCAa---UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 40491 | 0.69 | 0.872691 |
Target: 5'- cCCaCGGUauuuGUUgUCGGCACCGGgcuucgggACGg -3' miRNA: 3'- -GG-GCCG----CAAgAGCCGUGGCCaa------UGCg -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 101251 | 0.69 | 0.879528 |
Target: 5'- gCCGcGUGUggccagCGGCGCCGGUU-UGCc -3' miRNA: 3'- gGGC-CGCAaga---GCCGUGGCCAAuGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 7116 | 0.69 | 0.871996 |
Target: 5'- uUCGGCGUUCUuucccaaCGGCGuggacggucuCCGGUgACGUu -3' miRNA: 3'- gGGCCGCAAGA-------GCCGU----------GGCCAaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 159282 | 0.69 | 0.85103 |
Target: 5'- aCUGGUGcuggCGGCGCCGG--GCGCc -3' miRNA: 3'- gGGCCGCaagaGCCGUGGCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 197068 | 0.69 | 0.865659 |
Target: 5'- gCUCGGCGcUCUCGGaCGCCGaGcUGaGCa -3' miRNA: 3'- -GGGCCGCaAGAGCC-GUGGC-CaAUgCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 224604 | 0.69 | 0.85103 |
Target: 5'- aCCGGaCGUgCUUGG-ACUGGUacaUACGCa -3' miRNA: 3'- gGGCC-GCAaGAGCCgUGGCCA---AUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 118534 | 0.68 | 0.886167 |
Target: 5'- cCUCGGCGUaCUgcaGGCugUGGgugGCGUg -3' miRNA: 3'- -GGGCCGCAaGAg--CCGugGCCaa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 160134 | 0.68 | 0.898834 |
Target: 5'- aCCGGC--UCUCcgguggggaGCugCGGUUGCGUg -3' miRNA: 3'- gGGCCGcaAGAGc--------CGugGCCAAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 1210 | 0.68 | 0.916261 |
Target: 5'- gCgCGGCGUUUUUGGCcaacaGCaCGGgccGCGCc -3' miRNA: 3'- -GgGCCGCAAGAGCCG-----UG-GCCaa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 38655 | 0.68 | 0.914604 |
Target: 5'- gCCCGGCGUcugcagcgccaccgUCgugcCGGCccACCGccgGCGCa -3' miRNA: 3'- -GGGCCGCA--------------AGa---GCCG--UGGCcaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 95468 | 0.68 | 0.886167 |
Target: 5'- aUgGGCGcgCgucacgCGGCGCCGGUgucgGCGg -3' miRNA: 3'- gGgCCGCaaGa-----GCCGUGGCCAa---UGCg -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 142998 | 0.68 | 0.898834 |
Target: 5'- gCCGGCGg---CGGCGgUGGUggaggagguUGCGCc -3' miRNA: 3'- gGGCCGCaagaGCCGUgGCCA---------AUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 174685 | 0.67 | 0.926808 |
Target: 5'- aCCUGGUGUcg-CGGU-CCGGUUucCGCg -3' miRNA: 3'- -GGGCCGCAagaGCCGuGGCCAAu-GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 191241 | 0.67 | 0.931759 |
Target: 5'- uCCCGGCG-UCgugaaaGGCACgGcGUaAUGCg -3' miRNA: 3'- -GGGCCGCaAGag----CCGUGgC-CAaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 39347 | 0.67 | 0.931759 |
Target: 5'- gCCCGGCGgcccgCggGGUucuacCCGGUggACGCc -3' miRNA: 3'- -GGGCCGCaa---GagCCGu----GGCCAa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 40601 | 0.67 | 0.931759 |
Target: 5'- uUCGaGCGUUCU-GGcCGCCGGcgAUGCc -3' miRNA: 3'- gGGC-CGCAAGAgCC-GUGGCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 193467 | 0.67 | 0.931759 |
Target: 5'- aCCaGGUGUUCguggacgcguaCGGCGCCGuGUU-CGCc -3' miRNA: 3'- gGG-CCGCAAGa----------GCCGUGGC-CAAuGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 81481 | 0.67 | 0.94532 |
Target: 5'- -gUGGCGUcgucgCUCGGCgggugcgcaccGCCGGUgcUGCu -3' miRNA: 3'- ggGCCGCAa----GAGCCG-----------UGGCCAauGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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