miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1592 3' -56.7 NC_001347.2 + 177541 1.13 0.002852
Target:  5'- aCCCGGCGUUCUCGGCACCGGUUACGCc -3'
miRNA:   3'- -GGGCCGCAAGAGCCGUGGCCAAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 225521 0.75 0.539364
Target:  5'- cCCCGGCGggCgaaUCGGCcgGCUGGUcgucgGCGCu -3'
miRNA:   3'- -GGGCCGCaaG---AGCCG--UGGCCAa----UGCG- -5'
1592 3' -56.7 NC_001347.2 + 209042 0.75 0.558345
Target:  5'- gCCCGG-GUUCcgcucgCGGUugCGGUcGCGCa -3'
miRNA:   3'- -GGGCCgCAAGa-----GCCGugGCCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 94323 0.75 0.558345
Target:  5'- cCCaCGGCGUcCUCGGCgucgucggagGCCGGU-GCGUc -3'
miRNA:   3'- -GG-GCCGCAaGAGCCG----------UGGCCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 86252 0.75 0.57751
Target:  5'- cCUCGGCGaUCUCGGCGCgcgaagcuuCGGcgGCGUg -3'
miRNA:   3'- -GGGCCGCaAGAGCCGUG---------GCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 1495 0.74 0.596815
Target:  5'- aCCUGGCG--CUgGGCGCCGGguucCGCg -3'
miRNA:   3'- -GGGCCGCaaGAgCCGUGGCCaau-GCG- -5'
1592 3' -56.7 NC_001347.2 + 190153 0.74 0.616214
Target:  5'- aCCGG-GUUCUgcCGGCAUgGGggGCGCc -3'
miRNA:   3'- gGGCCgCAAGA--GCCGUGgCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 208054 0.73 0.693694
Target:  5'- uCgCGGCGUUCgUUGGCGCCGcUgcCGCg -3'
miRNA:   3'- -GgGCCGCAAG-AGCCGUGGCcAauGCG- -5'
1592 3' -56.7 NC_001347.2 + 1732 0.72 0.71275
Target:  5'- gCCGGCGgugggC-CGGCACgaCGGUgGCGCu -3'
miRNA:   3'- gGGCCGCaa---GaGCCGUG--GCCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 78359 0.72 0.722188
Target:  5'- aCCCGGCGUgg-UGGgACCcGGcgGCGCc -3'
miRNA:   3'- -GGGCCGCAagaGCCgUGG-CCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 199769 0.72 0.731557
Target:  5'- gCUCGGU-UUCUuggCGGCGCCGGUgcCGCc -3'
miRNA:   3'- -GGGCCGcAAGA---GCCGUGGCCAauGCG- -5'
1592 3' -56.7 NC_001347.2 + 201491 0.71 0.750053
Target:  5'- aUCCGGCGUcgCU-GGCGCUuGGU-GCGCg -3'
miRNA:   3'- -GGGCCGCAa-GAgCCGUGG-CCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 37911 0.71 0.768175
Target:  5'- gCCCGuGCGg-CUCGGCGCCcacaGCGCg -3'
miRNA:   3'- -GGGC-CGCaaGAGCCGUGGccaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 76907 0.71 0.78586
Target:  5'- gCgCGGCGaUCaccgUGGUACCGGUgaucACGCa -3'
miRNA:   3'- -GgGCCGCaAGa---GCCGUGGCCAa---UGCG- -5'
1592 3' -56.7 NC_001347.2 + 126920 0.71 0.78586
Target:  5'- aCCUGGCGggcuUCuUCGGCACCucc-ACGCa -3'
miRNA:   3'- -GGGCCGCa---AG-AGCCGUGGccaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 38012 0.71 0.78586
Target:  5'- gCCGcGCGgcCUCGGCGgCGG--GCGCc -3'
miRNA:   3'- gGGC-CGCaaGAGCCGUgGCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 128678 0.71 0.789339
Target:  5'- gCCGGCGaccgccgUCUgagccucacuuuccaCGGCGCCGGUgaccCGCc -3'
miRNA:   3'- gGGCCGCa------AGA---------------GCCGUGGCCAau--GCG- -5'
1592 3' -56.7 NC_001347.2 + 109471 0.71 0.794519
Target:  5'- aCCGGCGg---CGGCGCCauGGcggGCGCc -3'
miRNA:   3'- gGGCCGCaagaGCCGUGG--CCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 14053 0.7 0.811433
Target:  5'- gCCGGCuGUUUcUGcGCACCGGUccgaACGCu -3'
miRNA:   3'- gGGCCG-CAAGaGC-CGUGGCCAa---UGCG- -5'
1592 3' -56.7 NC_001347.2 + 8622 0.7 0.835686
Target:  5'- gCUGGCGUUCcCGuaGCgGGU-GCGCa -3'
miRNA:   3'- gGGCCGCAAGaGCcgUGgCCAaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.