Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1592 | 3' | -56.7 | NC_001347.2 | + | 222127 | 0.67 | 0.931759 |
Target: 5'- -aCGGCGgcuauuggaUUCGGCAUUGG-UGCGCc -3' miRNA: 3'- ggGCCGCaa-------GAGCCGUGGCCaAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 14256 | 0.67 | 0.936493 |
Target: 5'- aUCCGGCugcggGUUCUggcccugaCGGCGCUGcaGUUAUGCc -3' miRNA: 3'- -GGGCCG-----CAAGA--------GCCGUGGC--CAAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 68468 | 0.67 | 0.941013 |
Target: 5'- cCCUGcuGCG-UCUUGGCGCCGGccgaagccuCGCc -3' miRNA: 3'- -GGGC--CGCaAGAGCCGUGGCCaau------GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 2362 | 0.67 | 0.941013 |
Target: 5'- gCUgGGCGcgCU-GGCGCUGGg-ACGCg -3' miRNA: 3'- -GGgCCGCaaGAgCCGUGGCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 184394 | 0.67 | 0.944899 |
Target: 5'- aCgGGCGUugcggggcuUCUuggacucgugaagCGGCGCCGGgu-CGCu -3' miRNA: 3'- gGgCCGCA---------AGA-------------GCCGUGGCCaauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 81481 | 0.67 | 0.94532 |
Target: 5'- -gUGGCGUcgucgCUCGGCgggugcgcaccGCCGGUgcUGCu -3' miRNA: 3'- ggGCCGCAa----GAGCCG-----------UGGCCAauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 50000 | 0.67 | 0.94532 |
Target: 5'- aCCCaa---UCUUGGUAUUGGUUACGCa -3' miRNA: 3'- -GGGccgcaAGAGCCGUGGCCAAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 44030 | 0.67 | 0.94532 |
Target: 5'- aCgCGGUGgcgaCGGCAgCGGUggugGCGCu -3' miRNA: 3'- -GgGCCGCaagaGCCGUgGCCAa---UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 24657 | 0.67 | 0.94532 |
Target: 5'- uCCUGGCGcacaUCcCGGCGCUaGGUgucACGUg -3' miRNA: 3'- -GGGCCGCa---AGaGCCGUGG-CCAa--UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 197557 | 0.66 | 0.949415 |
Target: 5'- gCCGGCGUgg-CGGCcgaCGGcaGCGUg -3' miRNA: 3'- gGGCCGCAagaGCCGug-GCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 12800 | 0.66 | 0.949415 |
Target: 5'- gCCGGCGUUUUCacuaCGCCGuGgacgACGCc -3' miRNA: 3'- gGGCCGCAAGAGcc--GUGGC-Caa--UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 194569 | 0.66 | 0.953301 |
Target: 5'- aCCGGCGcUUCUCGugccuGCGCCaGGcuggcCGCu -3' miRNA: 3'- gGGCCGC-AAGAGC-----CGUGG-CCaau--GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 148611 | 0.66 | 0.953301 |
Target: 5'- aCCGGCGgug-CGGuCGCgGGUggccgGCGUc -3' miRNA: 3'- gGGCCGCaagaGCC-GUGgCCAa----UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 77874 | 0.66 | 0.953301 |
Target: 5'- gCCGaGCGc-CUgGGCGCCG--UGCGCg -3' miRNA: 3'- gGGC-CGCaaGAgCCGUGGCcaAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 126630 | 0.66 | 0.95698 |
Target: 5'- aCCUGGCcuaccgCaCGGCGCUGGcacGCGCg -3' miRNA: 3'- -GGGCCGcaa---GaGCCGUGGCCaa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 31126 | 0.66 | 0.95698 |
Target: 5'- gCCGGCGUcca-GGCugccCUGGUUGcCGCu -3' miRNA: 3'- gGGCCGCAagagCCGu---GGCCAAU-GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 110445 | 0.66 | 0.95698 |
Target: 5'- -aCGGU---CUCGGUACUGGccuUUGCGCu -3' miRNA: 3'- ggGCCGcaaGAGCCGUGGCC---AAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 188143 | 0.66 | 0.95698 |
Target: 5'- gCCCaugGUUCUCuGGCACCGGc--CGCc -3' miRNA: 3'- -GGGccgCAAGAG-CCGUGGCCaauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 206691 | 0.66 | 0.960456 |
Target: 5'- uCUCGGCGggccUCUgGGgGCCGcacGgaGCGCg -3' miRNA: 3'- -GGGCCGCa---AGAgCCgUGGC---CaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 19754 | 0.66 | 0.963734 |
Target: 5'- gCUGGUGUUg-CcGCACCGGUUGgaGCa -3' miRNA: 3'- gGGCCGCAAgaGcCGUGGCCAAUg-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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