miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1592 3' -56.7 NC_001347.2 + 2362 0.67 0.941013
Target:  5'- gCUgGGCGcgCU-GGCGCUGGg-ACGCg -3'
miRNA:   3'- -GGgCCGCaaGAgCCGUGGCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 14256 0.67 0.936493
Target:  5'- aUCCGGCugcggGUUCUggcccugaCGGCGCUGcaGUUAUGCc -3'
miRNA:   3'- -GGGCCG-----CAAGA--------GCCGUGGC--CAAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 222127 0.67 0.931759
Target:  5'- -aCGGCGgcuauuggaUUCGGCAUUGG-UGCGCc -3'
miRNA:   3'- ggGCCGCaa-------GAGCCGUGGCCaAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 191241 0.67 0.931759
Target:  5'- uCCCGGCG-UCgugaaaGGCACgGcGUaAUGCg -3'
miRNA:   3'- -GGGCCGCaAGag----CCGUGgC-CAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 39347 0.67 0.931759
Target:  5'- gCCCGGCGgcccgCggGGUucuacCCGGUggACGCc -3'
miRNA:   3'- -GGGCCGCaa---GagCCGu----GGCCAa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 40601 0.67 0.931759
Target:  5'- uUCGaGCGUUCU-GGcCGCCGGcgAUGCc -3'
miRNA:   3'- gGGC-CGCAAGAgCC-GUGGCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 193467 0.67 0.931759
Target:  5'- aCCaGGUGUUCguggacgcguaCGGCGCCGuGUU-CGCc -3'
miRNA:   3'- gGG-CCGCAAGa----------GCCGUGGC-CAAuGCG- -5'
1592 3' -56.7 NC_001347.2 + 174685 0.67 0.926808
Target:  5'- aCCUGGUGUcg-CGGU-CCGGUUucCGCg -3'
miRNA:   3'- -GGGCCGCAagaGCCGuGGCCAAu-GCG- -5'
1592 3' -56.7 NC_001347.2 + 168963 0.67 0.921642
Target:  5'- gCCUGGUagaGUUCgaGGCgcaGCCGGgcGCGCu -3'
miRNA:   3'- -GGGCCG---CAAGagCCG---UGGCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 1210 0.68 0.916261
Target:  5'- gCgCGGCGUUUUUGGCcaacaGCaCGGgccGCGCc -3'
miRNA:   3'- -GgGCCGCAAGAGCCG-----UG-GCCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 38655 0.68 0.914604
Target:  5'- gCCCGGCGUcugcagcgccaccgUCgugcCGGCccACCGccgGCGCa -3'
miRNA:   3'- -GGGCCGCA--------------AGa---GCCG--UGGCcaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 142998 0.68 0.898834
Target:  5'- gCCGGCGg---CGGCGgUGGUggaggagguUGCGCc -3'
miRNA:   3'- gGGCCGCaagaGCCGUgGCCA---------AUGCG- -5'
1592 3' -56.7 NC_001347.2 + 160134 0.68 0.898834
Target:  5'- aCCGGC--UCUCcgguggggaGCugCGGUUGCGUg -3'
miRNA:   3'- gGGCCGcaAGAGc--------CGugGCCAAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 118534 0.68 0.886167
Target:  5'- cCUCGGCGUaCUgcaGGCugUGGgugGCGUg -3'
miRNA:   3'- -GGGCCGCAaGAg--CCGugGCCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 95468 0.68 0.886167
Target:  5'- aUgGGCGcgCgucacgCGGCGCCGGUgucgGCGg -3'
miRNA:   3'- gGgCCGCaaGa-----GCCGUGGCCAa---UGCg -5'
1592 3' -56.7 NC_001347.2 + 101251 0.69 0.879528
Target:  5'- gCCGcGUGUggccagCGGCGCCGGUU-UGCc -3'
miRNA:   3'- gGGC-CGCAaga---GCCGUGGCCAAuGCG- -5'
1592 3' -56.7 NC_001347.2 + 40491 0.69 0.872691
Target:  5'- cCCaCGGUauuuGUUgUCGGCACCGGgcuucgggACGg -3'
miRNA:   3'- -GG-GCCG----CAAgAGCCGUGGCCaa------UGCg -5'
1592 3' -56.7 NC_001347.2 + 7116 0.69 0.871996
Target:  5'- uUCGGCGUUCUuucccaaCGGCGuggacggucuCCGGUgACGUu -3'
miRNA:   3'- gGGCCGCAAGA-------GCCGU----------GGCCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 197068 0.69 0.865659
Target:  5'- gCUCGGCGcUCUCGGaCGCCGaGcUGaGCa -3'
miRNA:   3'- -GGGCCGCaAGAGCC-GUGGC-CaAUgCG- -5'
1592 3' -56.7 NC_001347.2 + 224604 0.69 0.85103
Target:  5'- aCCGGaCGUgCUUGG-ACUGGUacaUACGCa -3'
miRNA:   3'- gGGCC-GCAaGAGCCgUGGCCA---AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.