miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1592 3' -56.7 NC_001347.2 + 50000 0.67 0.94532
Target:  5'- aCCCaa---UCUUGGUAUUGGUUACGCa -3'
miRNA:   3'- -GGGccgcaAGAGCCGUGGCCAAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 68468 0.67 0.941013
Target:  5'- cCCUGcuGCG-UCUUGGCGCCGGccgaagccuCGCc -3'
miRNA:   3'- -GGGC--CGCaAGAGCCGUGGCCaau------GCG- -5'
1592 3' -56.7 NC_001347.2 + 76907 0.71 0.78586
Target:  5'- gCgCGGCGaUCaccgUGGUACCGGUgaucACGCa -3'
miRNA:   3'- -GgGCCGCaAGa---GCCGUGGCCAa---UGCG- -5'
1592 3' -56.7 NC_001347.2 + 77874 0.66 0.953301
Target:  5'- gCCGaGCGc-CUgGGCGCCG--UGCGCg -3'
miRNA:   3'- gGGC-CGCaaGAgCCGUGGCcaAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 78359 0.72 0.722188
Target:  5'- aCCCGGCGUgg-UGGgACCcGGcgGCGCc -3'
miRNA:   3'- -GGGCCGCAagaGCCgUGG-CCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 81481 0.67 0.94532
Target:  5'- -gUGGCGUcgucgCUCGGCgggugcgcaccGCCGGUgcUGCu -3'
miRNA:   3'- ggGCCGCAa----GAGCCG-----------UGGCCAauGCG- -5'
1592 3' -56.7 NC_001347.2 + 86252 0.75 0.57751
Target:  5'- cCUCGGCGaUCUCGGCGCgcgaagcuuCGGcgGCGUg -3'
miRNA:   3'- -GGGCCGCaAGAGCCGUG---------GCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 94323 0.75 0.558345
Target:  5'- cCCaCGGCGUcCUCGGCgucgucggagGCCGGU-GCGUc -3'
miRNA:   3'- -GG-GCCGCAaGAGCCG----------UGGCCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 95468 0.68 0.886167
Target:  5'- aUgGGCGcgCgucacgCGGCGCCGGUgucgGCGg -3'
miRNA:   3'- gGgCCGCaaGa-----GCCGUGGCCAa---UGCg -5'
1592 3' -56.7 NC_001347.2 + 101251 0.69 0.879528
Target:  5'- gCCGcGUGUggccagCGGCGCCGGUU-UGCc -3'
miRNA:   3'- gGGC-CGCAaga---GCCGUGGCCAAuGCG- -5'
1592 3' -56.7 NC_001347.2 + 109471 0.71 0.794519
Target:  5'- aCCGGCGg---CGGCGCCauGGcggGCGCc -3'
miRNA:   3'- gGGCCGCaagaGCCGUGG--CCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 110445 0.66 0.95698
Target:  5'- -aCGGU---CUCGGUACUGGccuUUGCGCu -3'
miRNA:   3'- ggGCCGcaaGAGCCGUGGCC---AAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 118534 0.68 0.886167
Target:  5'- cCUCGGCGUaCUgcaGGCugUGGgugGCGUg -3'
miRNA:   3'- -GGGCCGCAaGAg--CCGugGCCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 126630 0.66 0.95698
Target:  5'- aCCUGGCcuaccgCaCGGCGCUGGcacGCGCg -3'
miRNA:   3'- -GGGCCGcaa---GaGCCGUGGCCaa-UGCG- -5'
1592 3' -56.7 NC_001347.2 + 126920 0.71 0.78586
Target:  5'- aCCUGGCGggcuUCuUCGGCACCucc-ACGCa -3'
miRNA:   3'- -GGGCCGCa---AG-AGCCGUGGccaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 128678 0.71 0.789339
Target:  5'- gCCGGCGaccgccgUCUgagccucacuuuccaCGGCGCCGGUgaccCGCc -3'
miRNA:   3'- gGGCCGCa------AGA---------------GCCGUGGCCAau--GCG- -5'
1592 3' -56.7 NC_001347.2 + 142998 0.68 0.898834
Target:  5'- gCCGGCGg---CGGCGgUGGUggaggagguUGCGCc -3'
miRNA:   3'- gGGCCGCaagaGCCGUgGCCA---------AUGCG- -5'
1592 3' -56.7 NC_001347.2 + 148611 0.66 0.953301
Target:  5'- aCCGGCGgug-CGGuCGCgGGUggccgGCGUc -3'
miRNA:   3'- gGGCCGCaagaGCC-GUGgCCAa----UGCG- -5'
1592 3' -56.7 NC_001347.2 + 150610 0.7 0.843445
Target:  5'- gUCGGCGUuuccaacgacaaUCaCGGCGCCGGcggUACuGCg -3'
miRNA:   3'- gGGCCGCA------------AGaGCCGUGGCCa--AUG-CG- -5'
1592 3' -56.7 NC_001347.2 + 159282 0.69 0.85103
Target:  5'- aCUGGUGcuggCGGCGCCGG--GCGCc -3'
miRNA:   3'- gGGCCGCaagaGCCGUGGCCaaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.