Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1592 | 3' | -56.7 | NC_001347.2 | + | 159565 | 0.7 | 0.843445 |
Target: 5'- aCCGGCGgugUUggagCGGCGCCag--ACGCa -3' miRNA: 3'- gGGCCGCa--AGa---GCCGUGGccaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 160134 | 0.68 | 0.898834 |
Target: 5'- aCCGGC--UCUCcgguggggaGCugCGGUUGCGUg -3' miRNA: 3'- gGGCCGcaAGAGc--------CGugGCCAAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 168963 | 0.67 | 0.921642 |
Target: 5'- gCCUGGUagaGUUCgaGGCgcaGCCGGgcGCGCu -3' miRNA: 3'- -GGGCCG---CAAGagCCG---UGGCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 174685 | 0.67 | 0.926808 |
Target: 5'- aCCUGGUGUcg-CGGU-CCGGUUucCGCg -3' miRNA: 3'- -GGGCCGCAagaGCCGuGGCCAAu-GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 177541 | 1.13 | 0.002852 |
Target: 5'- aCCCGGCGUUCUCGGCACCGGUUACGCc -3' miRNA: 3'- -GGGCCGCAAGAGCCGUGGCCAAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 184394 | 0.67 | 0.944899 |
Target: 5'- aCgGGCGUugcggggcuUCUuggacucgugaagCGGCGCCGGgu-CGCu -3' miRNA: 3'- gGgCCGCA---------AGA-------------GCCGUGGCCaauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 188143 | 0.66 | 0.95698 |
Target: 5'- gCCCaugGUUCUCuGGCACCGGc--CGCc -3' miRNA: 3'- -GGGccgCAAGAG-CCGUGGCCaauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 188825 | 0.66 | 0.963734 |
Target: 5'- aCCGaCGUUgacgUUCGGCGCCGGaguuaACGUu -3' miRNA: 3'- gGGCcGCAA----GAGCCGUGGCCaa---UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 190153 | 0.74 | 0.616214 |
Target: 5'- aCCGG-GUUCUgcCGGCAUgGGggGCGCc -3' miRNA: 3'- gGGCCgCAAGA--GCCGUGgCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 191241 | 0.67 | 0.931759 |
Target: 5'- uCCCGGCG-UCgugaaaGGCACgGcGUaAUGCg -3' miRNA: 3'- -GGGCCGCaAGag----CCGUGgC-CAaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 192978 | 0.65 | 0.965912 |
Target: 5'- cCCCGGCGUUCagucgCGGCugagcguguggaggACgGGguggaGCg -3' miRNA: 3'- -GGGCCGCAAGa----GCCG--------------UGgCCaaug-CG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 193467 | 0.67 | 0.931759 |
Target: 5'- aCCaGGUGUUCguggacgcguaCGGCGCCGuGUU-CGCc -3' miRNA: 3'- gGG-CCGCAAGa----------GCCGUGGC-CAAuGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 194569 | 0.66 | 0.953301 |
Target: 5'- aCCGGCGcUUCUCGugccuGCGCCaGGcuggcCGCu -3' miRNA: 3'- gGGCCGC-AAGAGC-----CGUGG-CCaau--GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 197068 | 0.69 | 0.865659 |
Target: 5'- gCUCGGCGcUCUCGGaCGCCGaGcUGaGCa -3' miRNA: 3'- -GGGCCGCaAGAGCC-GUGGC-CaAUgCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 197557 | 0.66 | 0.949415 |
Target: 5'- gCCGGCGUgg-CGGCcgaCGGcaGCGUg -3' miRNA: 3'- gGGCCGCAagaGCCGug-GCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 199769 | 0.72 | 0.731557 |
Target: 5'- gCUCGGU-UUCUuggCGGCGCCGGUgcCGCc -3' miRNA: 3'- -GGGCCGcAAGA---GCCGUGGCCAauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 201491 | 0.71 | 0.750053 |
Target: 5'- aUCCGGCGUcgCU-GGCGCUuGGU-GCGCg -3' miRNA: 3'- -GGGCCGCAa-GAgCCGUGG-CCAaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 206691 | 0.66 | 0.960456 |
Target: 5'- uCUCGGCGggccUCUgGGgGCCGcacGgaGCGCg -3' miRNA: 3'- -GGGCCGCa---AGAgCCgUGGC---CaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 208054 | 0.73 | 0.693694 |
Target: 5'- uCgCGGCGUUCgUUGGCGCCGcUgcCGCg -3' miRNA: 3'- -GgGCCGCAAG-AGCCGUGGCcAauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 209042 | 0.75 | 0.558345 |
Target: 5'- gCCCGG-GUUCcgcucgCGGUugCGGUcGCGCa -3' miRNA: 3'- -GGGCCgCAAGa-----GCCGugGCCAaUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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