miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1592 3' -56.7 NC_001347.2 + 225521 0.75 0.539364
Target:  5'- cCCCGGCGggCgaaUCGGCcgGCUGGUcgucgGCGCu -3'
miRNA:   3'- -GGGCCGCaaG---AGCCG--UGGCCAa----UGCG- -5'
1592 3' -56.7 NC_001347.2 + 224604 0.69 0.85103
Target:  5'- aCCGGaCGUgCUUGG-ACUGGUacaUACGCa -3'
miRNA:   3'- gGGCC-GCAaGAGCCgUGGCCA---AUGCG- -5'
1592 3' -56.7 NC_001347.2 + 222127 0.67 0.931759
Target:  5'- -aCGGCGgcuauuggaUUCGGCAUUGG-UGCGCc -3'
miRNA:   3'- ggGCCGCaa-------GAGCCGUGGCCaAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 209042 0.75 0.558345
Target:  5'- gCCCGG-GUUCcgcucgCGGUugCGGUcGCGCa -3'
miRNA:   3'- -GGGCCgCAAGa-----GCCGugGCCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 208054 0.73 0.693694
Target:  5'- uCgCGGCGUUCgUUGGCGCCGcUgcCGCg -3'
miRNA:   3'- -GgGCCGCAAG-AGCCGUGGCcAauGCG- -5'
1592 3' -56.7 NC_001347.2 + 206691 0.66 0.960456
Target:  5'- uCUCGGCGggccUCUgGGgGCCGcacGgaGCGCg -3'
miRNA:   3'- -GGGCCGCa---AGAgCCgUGGC---CaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 201491 0.71 0.750053
Target:  5'- aUCCGGCGUcgCU-GGCGCUuGGU-GCGCg -3'
miRNA:   3'- -GGGCCGCAa-GAgCCGUGG-CCAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 199769 0.72 0.731557
Target:  5'- gCUCGGU-UUCUuggCGGCGCCGGUgcCGCc -3'
miRNA:   3'- -GGGCCGcAAGA---GCCGUGGCCAauGCG- -5'
1592 3' -56.7 NC_001347.2 + 197557 0.66 0.949415
Target:  5'- gCCGGCGUgg-CGGCcgaCGGcaGCGUg -3'
miRNA:   3'- gGGCCGCAagaGCCGug-GCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 197068 0.69 0.865659
Target:  5'- gCUCGGCGcUCUCGGaCGCCGaGcUGaGCa -3'
miRNA:   3'- -GGGCCGCaAGAGCC-GUGGC-CaAUgCG- -5'
1592 3' -56.7 NC_001347.2 + 194569 0.66 0.953301
Target:  5'- aCCGGCGcUUCUCGugccuGCGCCaGGcuggcCGCu -3'
miRNA:   3'- gGGCCGC-AAGAGC-----CGUGG-CCaau--GCG- -5'
1592 3' -56.7 NC_001347.2 + 193467 0.67 0.931759
Target:  5'- aCCaGGUGUUCguggacgcguaCGGCGCCGuGUU-CGCc -3'
miRNA:   3'- gGG-CCGCAAGa----------GCCGUGGC-CAAuGCG- -5'
1592 3' -56.7 NC_001347.2 + 192978 0.65 0.965912
Target:  5'- cCCCGGCGUUCagucgCGGCugagcguguggaggACgGGguggaGCg -3'
miRNA:   3'- -GGGCCGCAAGa----GCCG--------------UGgCCaaug-CG- -5'
1592 3' -56.7 NC_001347.2 + 191241 0.67 0.931759
Target:  5'- uCCCGGCG-UCgugaaaGGCACgGcGUaAUGCg -3'
miRNA:   3'- -GGGCCGCaAGag----CCGUGgC-CAaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 190153 0.74 0.616214
Target:  5'- aCCGG-GUUCUgcCGGCAUgGGggGCGCc -3'
miRNA:   3'- gGGCCgCAAGA--GCCGUGgCCaaUGCG- -5'
1592 3' -56.7 NC_001347.2 + 188825 0.66 0.963734
Target:  5'- aCCGaCGUUgacgUUCGGCGCCGGaguuaACGUu -3'
miRNA:   3'- gGGCcGCAA----GAGCCGUGGCCaa---UGCG- -5'
1592 3' -56.7 NC_001347.2 + 188143 0.66 0.95698
Target:  5'- gCCCaugGUUCUCuGGCACCGGc--CGCc -3'
miRNA:   3'- -GGGccgCAAGAG-CCGUGGCCaauGCG- -5'
1592 3' -56.7 NC_001347.2 + 184394 0.67 0.944899
Target:  5'- aCgGGCGUugcggggcuUCUuggacucgugaagCGGCGCCGGgu-CGCu -3'
miRNA:   3'- gGgCCGCA---------AGA-------------GCCGUGGCCaauGCG- -5'
1592 3' -56.7 NC_001347.2 + 177541 1.13 0.002852
Target:  5'- aCCCGGCGUUCUCGGCACCGGUUACGCc -3'
miRNA:   3'- -GGGCCGCAAGAGCCGUGGCCAAUGCG- -5'
1592 3' -56.7 NC_001347.2 + 174685 0.67 0.926808
Target:  5'- aCCUGGUGUcg-CGGU-CCGGUUucCGCg -3'
miRNA:   3'- -GGGCCGCAagaGCCGuGGCCAAu-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.