Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1592 | 3' | -56.7 | NC_001347.2 | + | 168963 | 0.67 | 0.921642 |
Target: 5'- gCCUGGUagaGUUCgaGGCgcaGCCGGgcGCGCu -3' miRNA: 3'- -GGGCCG---CAAGagCCG---UGGCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 160134 | 0.68 | 0.898834 |
Target: 5'- aCCGGC--UCUCcgguggggaGCugCGGUUGCGUg -3' miRNA: 3'- gGGCCGcaAGAGc--------CGugGCCAAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 159565 | 0.7 | 0.843445 |
Target: 5'- aCCGGCGgugUUggagCGGCGCCag--ACGCa -3' miRNA: 3'- gGGCCGCa--AGa---GCCGUGGccaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 159282 | 0.69 | 0.85103 |
Target: 5'- aCUGGUGcuggCGGCGCCGG--GCGCc -3' miRNA: 3'- gGGCCGCaagaGCCGUGGCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 150610 | 0.7 | 0.843445 |
Target: 5'- gUCGGCGUuuccaacgacaaUCaCGGCGCCGGcggUACuGCg -3' miRNA: 3'- gGGCCGCA------------AGaGCCGUGGCCa--AUG-CG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 148611 | 0.66 | 0.953301 |
Target: 5'- aCCGGCGgug-CGGuCGCgGGUggccgGCGUc -3' miRNA: 3'- gGGCCGCaagaGCC-GUGgCCAa----UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 142998 | 0.68 | 0.898834 |
Target: 5'- gCCGGCGg---CGGCGgUGGUggaggagguUGCGCc -3' miRNA: 3'- gGGCCGCaagaGCCGUgGCCA---------AUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 128678 | 0.71 | 0.789339 |
Target: 5'- gCCGGCGaccgccgUCUgagccucacuuuccaCGGCGCCGGUgaccCGCc -3' miRNA: 3'- gGGCCGCa------AGA---------------GCCGUGGCCAau--GCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 126920 | 0.71 | 0.78586 |
Target: 5'- aCCUGGCGggcuUCuUCGGCACCucc-ACGCa -3' miRNA: 3'- -GGGCCGCa---AG-AGCCGUGGccaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 126630 | 0.66 | 0.95698 |
Target: 5'- aCCUGGCcuaccgCaCGGCGCUGGcacGCGCg -3' miRNA: 3'- -GGGCCGcaa---GaGCCGUGGCCaa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 118534 | 0.68 | 0.886167 |
Target: 5'- cCUCGGCGUaCUgcaGGCugUGGgugGCGUg -3' miRNA: 3'- -GGGCCGCAaGAg--CCGugGCCaa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 110445 | 0.66 | 0.95698 |
Target: 5'- -aCGGU---CUCGGUACUGGccuUUGCGCu -3' miRNA: 3'- ggGCCGcaaGAGCCGUGGCC---AAUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 109471 | 0.71 | 0.794519 |
Target: 5'- aCCGGCGg---CGGCGCCauGGcggGCGCc -3' miRNA: 3'- gGGCCGCaagaGCCGUGG--CCaa-UGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 101251 | 0.69 | 0.879528 |
Target: 5'- gCCGcGUGUggccagCGGCGCCGGUU-UGCc -3' miRNA: 3'- gGGC-CGCAaga---GCCGUGGCCAAuGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 95468 | 0.68 | 0.886167 |
Target: 5'- aUgGGCGcgCgucacgCGGCGCCGGUgucgGCGg -3' miRNA: 3'- gGgCCGCaaGa-----GCCGUGGCCAa---UGCg -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 94323 | 0.75 | 0.558345 |
Target: 5'- cCCaCGGCGUcCUCGGCgucgucggagGCCGGU-GCGUc -3' miRNA: 3'- -GG-GCCGCAaGAGCCG----------UGGCCAaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 86252 | 0.75 | 0.57751 |
Target: 5'- cCUCGGCGaUCUCGGCGCgcgaagcuuCGGcgGCGUg -3' miRNA: 3'- -GGGCCGCaAGAGCCGUG---------GCCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 81481 | 0.67 | 0.94532 |
Target: 5'- -gUGGCGUcgucgCUCGGCgggugcgcaccGCCGGUgcUGCu -3' miRNA: 3'- ggGCCGCAa----GAGCCG-----------UGGCCAauGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 78359 | 0.72 | 0.722188 |
Target: 5'- aCCCGGCGUgg-UGGgACCcGGcgGCGCc -3' miRNA: 3'- -GGGCCGCAagaGCCgUGG-CCaaUGCG- -5' |
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1592 | 3' | -56.7 | NC_001347.2 | + | 77874 | 0.66 | 0.953301 |
Target: 5'- gCCGaGCGc-CUgGGCGCCG--UGCGCg -3' miRNA: 3'- gGGC-CGCaaGAgCCGUGGCcaAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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